QUARK Ab Initio Results for YFDS_ECOLI


  Submitted Primary Sequence

>Length 120
MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLVRKFDALEAKCAALENKIIPVSAELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
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  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLVRKFDALEAKCAALENKIIPVSAELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA
CCEEEETTTTTTTTTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCTTTTTTEEETTTTTTEEEEEHHHHHHTTTTTTTTTTEEEEECCTTTTCEEEEEETTTTTTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MRMNVFEMEGFLRGKCVPRDLKVNETNAEYLVRKFDALEAKCAALENKIIPVSAELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQVGDLENVNITHWAVMPKAPEAGA
441100113100203001330313322131002102201110011233211010211322310000114130000000000121133321201000100203302000001013235375
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.480 to 2gw6A
SCOP code=c.52.2.1
TM-score=0.472 to 2ga5A
SCOP code=d.82.2.1
TM-score=0.433 to 1riyA
SCOP code=a.55.1.1
TM-score=0.451 to 1riyA
SCOP code=a.55.1.1
TM-score=0.479 to 1e8oB
SCOP code=d.49.1.1
Estimated TM-score of Model 1: 0.3307 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3675 ±0.0778