QUARK Ab Initio Results for YGDB_ECOLI


  Submitted Primary Sequence

>Length 135
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKMHCWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKMHCWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCTTTT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWGKMHCWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSLWRTGEVIDGNIVFSPRGWSDFCPLKERALCQLP
552210010000000000000000011023211220100021001000000000000000122321210100000000000000000000000323211200000000000000000000022333222445555
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.538 to 2iu5A
SCOP code=a.4.1.9
TM-score=0.619 to 1fbvA
SCOP code=a.39.1.7
TM-score=0.607 to 1h2sB
SCOP code=f.17.4.1
TM-score=0.589 to 1h2sB
SCOP code=f.17.4.1
TM-score=0.542 to 1q2hA
SCOP code=a.34.4.1
Estimated TM-score of Model 1: 0.4213 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4645 ±0.0778