QUARK Ab Initio Results for YHDN_ECOLI


  Submitted Primary Sequence

>Length 122
MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDILKGIRHDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLDKINDN
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDILKGIRHDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLDKINDN
HHHHHHHHHHHHHHHHHCTTTTTTTTTTTCCCTTTTTTTCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELRAGYRLLKNAGCLPPELEQRREAIQLLDILKGIRHDDPQYQEVSRRLSLLELKLRQAGLSTDFLRGDYADKLLDKINDN
35202210221012023313132021201102233112012102000200231200031021122023013103203333331230031012011103212222320112002201331344
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.523 to 2eyqA
SCOP code=b.34.18.1
TM-score=0.564 to 1sxjB
SCOP code=a.80.1.1
TM-score=0.502 to 2aplA
SCOP code=a.258.1.1
TM-score=0.504 to 1qkuA
SCOP code=a.123.1.1
TM-score=0.543 to 2o3lA
SCOP code=a.69.4.1
Estimated TM-score of Model 1: 0.4319 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4758 ±0.0778