QUARK Ab Initio Results for YAGK_ECOLI


  Submitted Primary Sequence

>Length 208
MKTYQGTHGVHILEYQSKINKLLCYLTNRYPRLIAVRVDLHYPKIVDNGDNICCFPNLEPGVISRMRESLRAKLEADRTRKVREDKRIYRCPLFIIWAKEYSESGKCHYHICLLFNKDAYYHLGDYDQDDNLRGMITGAWYSALRLERDDHPGLVHFPENCKYVLDTNSTDFQQNYQALLTRLDYLTKVESKVFGEGDRNFGCSQIEL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MKTYQGTHGVHILEYQSKINKLLCYLTNRYPRLIAVRVDLHYPKIVDNGDNICCFPNLEPGVISRMRESLRAKLEADRTRKVREDKRIYRCPLFIIWAKEYSESGKCHYHICLLFNKDAYYHLGDYDQDDNLRGMITGAWYSALRLERDDHPGLVHFPENCKYVLDTNSTDFQQNYQALLTRLDYLTKVESKVFGEGDRNFGCSQIEL
CTTTTTTTTTTTHHHHHHHHHHHHHHHHHCCCEEEEEEEEETTTTTCTTTTCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTTTTTEEEEEEEECCTTTTCEEEEETTTTTTEETTTTTTTTTTHHHHHHHHHHHHHCCTTTTTTTTTTTTTTTTTTETTTTTTHHHHHHHHHHHHHHHHHHHTTTTTTTTTTTCCTTTTC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position
Download Distance Profile from Fragments

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTYQGTHGVHILEYQSKINKLLCYLTNRYPRLIAVRVDLHYPKIVDNGDNICCFPNLEPGVISRMRESLRAKLEADRTRKVREDKRIYRCPLFIIWAKEYSESGKCHYHICLLFNKDAYYHLGDYDQDDNLRGMITGAWYSALRLERDDHPGLVHFPENCKYVLDTNSTDFQQNYQALLTRLDYLTKVESKVFGEGDRNFGCSQIEL
5522313312101200110130012003412100000000101411321211101131221001201300121021122332333432230300000011224224210000000131001111313332200000000001004133332200010031110001231331321020002001100221231123223211002144
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.457 to 1fc3A
SCOP code=a.4.6.3
TM-score=0.441 to 1a0dA
SCOP code=c.1.15.3
TM-score=0.404 to 1r6bX
SCOP code=a.174.1.1
TM-score=0.402 to 2r2vA
SCOP code=h.1.3.1
TM-score=0.417 to 1kanA
SCOP code=a.24.16.1
Estimated TM-score of Model 1: 0.3237 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3600 ±0.0778