QUARK Ab Initio Results for YDCC_ECOLI

Submitted Primary Sequence

>Length 378
MELKKLMGHISIIPDYRQAWKMEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSSDDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDEKSNEITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPAHDSYAMSEKSHGREEIRLHIVCDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKELEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVFKAGLRRKMRKAAMDRNYLASVLTGSGLS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MELKKLMGHISIIPDYRQAWKMEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSSDDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDEKSNEITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPAHDSYAMSEKSHGREEIRLHIVCDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKELEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVFKAGLRRKMRKAAMDRNYLASVLTGSGLS
CCCHHHHHHHHCCCCTTTTTTTETTTTHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTTTCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTTTTTTETTTTHHHCCTTTTTTTTTTTTTEEEETTTTTCEEEEEETTTTTTHHHHHHHHHHCCTTTTTEETTTTTEEECHHHHHHHHCCCCEEEETTTTTHHHHHHHHHHHHHHHCTTTTCCEEEECTTTTTCEEEEEEEETTTTHHCTTTTTTTTTEEEEEEEEEEEEECCCCCCEEEEEEEEEEECCTTTTHHHHHHHHHHHHHHHHCTTTTTTTTCCCCTTTTHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHCCCHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position

Predicted Solvent Accessibility

>0-buried to 9-exposed
MELKKLMGHISIIPDYRQAWKMEHKLSDILLLTICAVISGAEGWEDIEDFGETHPDFLKQYGDFENGIPVHDTIARVVSCISPAKFHECFINWMRDCHSSDDKDVIAIDGKTLRHSYDKSRRRGAIHVISAFSTMHSLVIGQIKTDEKSNEITAIPELLNMLDIKGKIITTDAMGCQKDIAEKIQKQGGDYLFAVKGNQGRLNKAFEEKFPLKELNNPAHDSYAMSEKSHGREEIRLHIVCDVPDELIDFTFEWKGLKKLCVAVSFRSIIAEQKKELEMTVRYYISSADLTAEKFATAIRNHWHVENKLHWRLDVVMNEDDCKIRRGNAAELFSGIRHIAINILTNDKVFKAGLRRKMRKAAMDRNYLASVLTGSGLS
542330111022031233223120200100000000000203103102100210020012102132100111000100110122101200120022022133320000103103211332444220000000013210000002033421101000200221213120000100001230022013220100000221113003001210113323332220101134341221000000021133113211323211100000001012344432120101000012322032002001200101141112231102232031231001100000020001002323224111211022011133000100221224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.405 to 2vyiA SCOP code=k.38.1.1	TM-score=0.366 to 2aplA SCOP code=a.258.1.1	TM-score=0.388 to 1ka4A SCOP code=d.92.1.5	TM-score=0.384 to 1mulA SCOP code=a.55.1.1	TM-score=0.386 to 2r2vA SCOP code=h.1.3.1

Estimated TM-score of Model 1: 0.3613 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4003 ±0.0778