QUARK Ab Initio Results for YFDF_ECOLI

Submitted Primary Sequence

>Length 352
MLPSISINNTSAAYPESINENNNDEVNGLVQEFKNLFNGKEGISTCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIDSNDTDHITIGIDNQEPIELPANYKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEFDESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSENARSASAWFESSKAIMAESFATGSDHQVVNELNGERLREPNDVFKRYGRAIRYDFQVDDAKYKCDHLKEIVSTLVGNKINVGHSQKIYKHFKDLEGKIEERLQNRQAEYQNEINQPSAPGVNFDDI
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MLPSISINNTSAAYPESINENNNDEVNGLVQEFKNLFNGKEGISTCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIDSNDTDHITIGIDNQEPIELPANYKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEFDESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSENARSASAWFESSKAIMAESFATGSDHQVVNELNGERLREPNDVFKRYGRAIRYDFQVDDAKYKCDHLKEIVSTLVGNKINVGHSQKIYKHFKDLEGKIEERLQNRQAEYQNEINQPSAPGVNFDDI
CCCEEEETTTTTTCCHHHTTTTCHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHCCTTTTTTTETTTTCEEEEEECCCCTTTTTCTTTTCCCTTTTTTTTTTHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHHHHTTTTTTCCCCCEEEETTTTTTCEEEEEEETTTTCCEEEETTTTTTTTHHHCCEEECCCHHHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCHHHHHHHCCHHHCCHHHHHCHHHHHHCTTTTECHHHHCTTTTHHHHHHHHCTTTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTTTTCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLPSISINNTSAAYPESINENNNDEVNGLVQEFKNLFNGKEGISTCIKHLLELIKNAIRVNDDPYRFNINNSSVTYIDIDSNDTDHITIGIDNQEPIELPANYKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTVTEFDESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRINGDSLTQYCSENARSASAWFESSKAIMAESFATGSDHQVVNELNGERLREPNDVFKRYGRAIRYDFQVDDAKYKCDHLKEIVSTLVGNKINVGHSQKIYKHFKDLEGKIEERLQNRQAEYQNEINQPSAPGVNFDDI
5321001222222113212333232011002102211223300220031001002200313322120202212000000122213212110233221312232333300210011200231321312300010023012312110011012102200220252142222200001042341110000021331210000011232121022002020320121023223202000210110002102222223001312133132132103210211311010111313132032001100213132212330032033012202321222213123312222122232444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.465 to 1n5uA SCOP code=a.126.1.1	TM-score=0.471 to 1et1A SCOP code=j.15.1.1	TM-score=0.432 to 2r2vA SCOP code=h.1.3.1	TM-score=0.430 to 1sv1A SCOP code=a.186.1.1	TM-score=0.412 to 4vhbA SCOP code=a.1.1.2

Estimated TM-score of Model 1: 0.3807 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.4210 ±0.0778