QUARK Ab Initio Results for YPJB_ECOLI


  Submitted Primary Sequence

>Length 263
MESRNSYENKIDEISSLSESKEHPIDIQEKKDAFVNEFKGVLFDKNTRSSELLFNFYECCYKFLPRAQPQDKIDSYNSALQAFSIFCSSTLTHNNIGFDFKLFPEVKLSGEHLETVFKYKNGDDVREIAKINITLQKEEGGLYNLRGLDFKGCFFSGQNFSNYDIQYVNWGTSLFDVDTPCIFNAPAYNKSNEKSLKPVSENGLSGVLTDRNNKIKLITGVAPFDDILFMDDDFDDSSSEDDPVENSPVVTSPVVSSSKSSFQ
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet;T-beta turn
MESRNSYENKIDEISSLSESKEHPIDIQEKKDAFVNEFKGVLFDKNTRSSELLFNFYECCYKFLPRAQPQDKIDSYNSALQAFSIFCSSTLTHNNIGFDFKLFPEVKLSGEHLETVFKYKNGDDVREIAKINITLQKEEGGLYNLRGLDFKGCFFSGQNFSNYDIQYVNWGTSLFDVDTPCIFNAPAYNKSNEKSLKPVSENGLSGVLTDRNNKIKLITGVAPFDDILFMDDDFDDSSSEDDPVENSPVVTSPVVSSSKSSFQ
CCCHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHEEEETTTTCHHHHHHHHHHHHHHHCTTTTCCHHHHHHHHHHHHHHHHHHCTTTTCCCCTTTTTTTTEECCCCCCCEEEETTTTTHHHHHHHEEEEEECCCCCEETTTTCCTTTTETTTTTTTTTTTTEETTTTEEETTTTTTEECCTTTTTTHHHHCCCCTTTTCCCEETTTTTCEEEEECCTTTTCCEETTTTTCCCCTTTTTTTTCCTTTTTTTTTTTTTTT
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted 3-state Secondary Structure Types
Download Predicted Starting Beta-turn Position

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MESRNSYENKIDEISSLSESKEHPIDIQEKKDAFVNEFKGVLFDKNTRSSELLFNFYECCYKFLPRAQPQDKIDSYNSALQAFSIFCSSTLTHNNIGFDFKLFPEVKLSGEHLETVFKYKNGDDVREIAKINITLQKEEGGLYNLRGLDFKGCFFSGQNFSNYDIQYVNWGTSLFDVDTPCIFNAPAYNKSNEKSLKPVSENGLSGVLTDRNNKIKLITGVAPFDDILFMDDDFDDSSSEDDPVENSPVVTSPVVSSSKSSFQ
54333223320220221232332213132112100320000001332201200010010013002322233102302200200100021102222010201000202022430120020231310210120101023332000002102030000113202211010000000002021100010122242133202212331120001233320100000011310001123133222332213313112132222242334
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Download Predicted Solvent Accessibility

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.412 to 2j49A
SCOP code=d.379.1.1
TM-score=0.436 to 1slyA
SCOP code=a.118.5.1
TM-score=0.418 to 1xszA
SCOP code=a.118.3.1
TM-score=0.469 to 2bzbA
SCOP code=a.30.7.1
TM-score=0.435 to 1n5uA
SCOP code=a.126.1.1
Estimated TM-score of Model 1: 0.3573 ±0.0833
Estimated TM-score of the Best of Top 5 Model: 0.3960 ±0.0778