Template-based Modeling Results for YBAA_ECOLI

Submitted Primary Sequence

>Length 117
MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCHHHHHCCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
442010000001231131022002200300330000100100032033131110210141333120000002011330111003202203213311320101020001100111244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
1	MUSTER	2okqA	1.000	1.000	5.156	threading_1	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
2	SPARKS	2okqa	1.000	1.000	5.913	threading_2	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
3	PROSPECT2	2okqA	1.000	1.000	2.924	threading_3	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
4	PPA-I	2okqA	1.000	1.000	13.965	threading_4	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
5	HHPRED-l	2okq_A	1.000	0.991	11.042	threading_5	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIID-
6	HHPRED-g	2okq_A	1.000	1.000	9.882	threading_6	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
7	SP3	2okqa	1.000	1.000	5.332	threading_7	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
8	SAM-T99	2okqA	1.000	1.000	8.022	threading_8	MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFDGKRMIYGGFESIIDE
9	MUSTER	1iujB	0.153	0.838	1.046	threading_9	M-FVTMNRIPVRPEYAEQFEEAFRQRARLVDRMPGFIRNLVL----------------RPKNPGDPYVVMTLWESEEAFRAWTEPAFKEARSGTLPKEA-FLGPNRLE-AFEVVLDS
10	SPARKS	1x8da	0.205	0.752	0.730	threading_10	MI-RKAFVMQVNPDAHEEYQRRHPELEAVLKSHGAHNYAIYL------------------DKARNLLFAMVEIES----EERWNAVASTDVMTDVMPANP-DNSPV-----SSELQE

Predicted Tertiary Structure


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TM-score=0.952 to 2okqA SCOP code=d.58.4.18	TM-score=0.456 to 1szoD SCOP code=c.14.1.3	TM-score=0.952 to 2okqA SCOP code=d.58.4.18	TM-score=0.952 to 2okqA SCOP code=d.58.4.18	TM-score=0.952 to 2okqA SCOP code=d.58.4.18