Template-based Modeling Results for YBGE_ECOLI


  Submitted Primary Sequence

>Length 97
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
4531011112101310020000000000000010001100231130200000000000000001001121120000000000000000000000112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTSELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF
1MUSTER2ahzA0.1580.9791.227threading_1MLSFLLTLKRMLRARAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDG--FSPQTDFGKIFTILYIFIGIGLVFGFIHKL
2SPARKS2ahya0.1460.9901.174threading_2MLSFLLTLKRMLRACLRKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDG-NFSPQTDFGKIFTILYIFIGIGLVFGFIHKL
3PPA-I2ahzA0.1560.9901.334threading_3MLSFLLTLKRMLRARAWKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGDG-NFSPQTDFGKIFTILYIFIGIGLVFGFIHKL
4MUSTER2qvoA0.1190.8660.898threading_4------RIKLLFKEKALEILMTIYYESLGGNDVY-IQYIASKVNSPHSYVWLIIKKFEEAKMV----CELRTKIIRL--TDKGQKIAQQIKSIIDIM
5SPARKS2qvoa0.1150.8970.963threading_5------RIKLLFKEKALEILMTIYYESLGGNDVY-IQYIASKVNSPHSYVWLIIKKFEEAKMVE---CELEGRTKIIRLTDKGQKIAQQIKSIIDIM
6PROSPECT22h7oA20.1210.9380.663threading_6WADVARQSLQRFDSTQYTAIHRQMMAAHAAITLQEVSEFTDDMRNFTVDSIPLLIQ------LGRSSLMDEHLVEQREKLRELTTIAERLNRLEREW
7PPA-I2x2vA0.1470.7010.980threading_7---------AFLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAE----------------AVPIIAIVISLLILF----
8HHPRED-l2gv1_A0.2130.4850.932threading_8---------------------------------------MSK----------VCIIAWVYGRVQGVGFRYTTQYEAKRLGEEGQVEKLMQWLKSGG-
9HHPRED-g3eff_K0.1450.8560.825threading_9---------SALHWRAAGTVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALW--WSVETATTVGYDLYPVTLWGRLVAVVV---MVAGITSFGLVT
10SP32ahya0.1510.9590.734threading_10LLTLKRMLRACLRA--WKDKEFQVLFVLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTV--GDGFSPQTDFGKIFTILYIFIGIGLVFGFIHKL

  Predicted Tertiary Structure

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TM-score=0.631 to 1xl6A
SCOP code=b.1.18.16
TM-score=0.625 to 1xl6A
SCOP code=b.1.18.16
TM-score=0.645 to 1xl6A
SCOP code=b.1.18.16
TM-score=0.738 to 1stzA
SCOP code=a.4.5.51
TM-score=0.647 to 1xl6A
SCOP code=b.1.18.16