Template-based Modeling Results for YCCB_ECOLI


  Submitted Primary Sequence

>Length 30
MWYLLWFVGILLMCSLSTLVLVWLDPRLKS
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--------10--------20--------30
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MWYLLWFVGILLMCSLSTLVLVWLDPRLKS
CCHHHHHHHHHHHHHHHHHHHEEECCCCCC
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--------10--------20--------30
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MWYLLWFVGILLMCSLSTLVLVWLDPRLKS
430000000000000000000000124245
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--------10--------20--------30
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMWYLLWFVGILLMCSLSTLVLVWLDPRLKS
1SPARKS1jb0x0.1380.9671.807threading_1PTYAFRTFWAVLLLAINFLVAAYYFAAAA-
2PPA-I2kv5A0.2070.9671.535threading_2MSLVIAPIFVGLVLEMISRVLDEEDDSRK-
3SP31jb0m0.2671.0001.161threading_3MALTDTQVYVALVIALLPAVLAFLSTELYK
4SAM-T993ba1A10.4000.8331.207threading_4E-----AIGVLMMCPMSTYLEQELDKRFKL
5SPARKS1jb0i0.1430.9331.478threading_5PWIFIPVVCWLMPTVVMGLLFLYIEGEA--
6PPA-I3bz2T0.1790.9331.512threading_6ITYVFIFACIIALFFFAIFFRE--PPRITK
7SP31jb0x0.1380.9671.131threading_7PTYAFRTFWAVLLLAINFLVAAYYFAAAA-
8SAM-T993ba1A0.4000.8331.032threading_8E-----AIGVLMMCPMSTYLEQELDKRFKL
9SPARKS1s5lx0.1671.0001.470threading_9KGFFIGLLSGAVVLGLTFAVLIQIDKVQRS
10PPA-I1s5li0.2671.0001.512threading_10METLKITVYIVVTFFVLLFVFGFLDPARNP

  Predicted Tertiary Structure

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TM-score=0.615 to 1w5cF
SCOP code=i.5.1.1
TM-score=0.586 to 1q90R
SCOP code=f.23.12.1
TM-score=0.532 to 1q90R
SCOP code=f.23.12.1
TM-score=0.424 to 1amuA
SCOP code=e.23.1.1
TM-score=0.670 to 1jb0I
SCOP code=f.23.17.1