Template-based Modeling Results for YDHR_ECOLI


  Submitted Primary Sequence

>Length 101
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHCCCCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
42100101121301102101210220021024130000000021342421100000121300210023001103411021010100101221121232424
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
1MUSTER1wd6A0.9790.9504.056threading_1-ATLLQLHFAFNGPFG-DAAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
2SPARKS1wd6a0.9790.9504.235threading_2-ATLLQLHFAFNGPFGDAAE-QLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
3PROSPECT21wd6A1.0000.9501.756threading_3-ATLLQLHFAFNGPFGDA-AEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQ---A
4PPA-I1wd6A0.9790.9506.449threading_4-ATLLQLHFAFNGPFG-DAAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
5HHPRED-l2asy_A1.0000.9908.247threading_5MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKL-
6HHPRED-g2asy_A1.0001.0006.748threading_6MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
7SP31wd6a0.9790.9504.272threading_7-ATLLQLHFAFNGPFG-DAAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
8SAM-T991wd6A0.9690.9506.231threading_8-ATLLQLHFAFNGPF-GDAAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQA---
9MUSTER1x7vC0.1960.9111.239threading_9PLTLIATITAAPG-HAEALERELRALVAPSRAEAGCLQYDLHQDRHDSHLFYIEQWRDDAALERHQNEHFLRFSRG-NEAL-LQNVKIDQ-LY-----RLA
10SPARKS3bn7a0.1120.8810.826threading_10-GLFHQVFFWLKNPGDKADRDKLIAGLKALKAIDVIQLHVGVPAATEKRDVSELVFKSVEDQKRYRPLLQKFVADCSHLWSKVVVYDSSV-----------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.948 to 1wd6A
TM-score=0.971 to native
SCOP code=d.58.4.12
TM-score=0.945 to 1wd6A
TM-score=0.968 to native
SCOP code=d.58.4.12
TM-score=0.924 to 1wd6A
TM-score=0.947 to native
SCOP code=d.58.4.12
TM-score=0.932 to 1wd6A
TM-score=0.955 to native
SCOP code=d.58.4.12
TM-score=0.948 to 1wd6A
TM-score=0.971 to native
SCOP code=d.58.4.12

  Experimental Structure

Download 1wd6A
SCOP code=d.58.4.12