Template-based Modeling Results for YGJH_ECOLI


  Submitted Primary Sequence

>Length 110
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
CCCCCHHHHHEEEEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEHHHCCCCHHHHCCCEEEEEEECCCCEECCEECCEEEEEEECCCCCEEEEECCCCCCCCCCEEC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
55312122111010100100202314513200001001144222000101311222212111000001033120111203000000313432200001134313322212
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMETVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
1MUSTER3ersX1.0001.0004.513threading_1METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
2SPARKS2cwpa0.3210.9914.704threading_2MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
3PROSPECT22cwpA0.3210.9912.133threading_3MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
4PPA-I3ersX1.0001.0007.373threading_4METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGQKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
5HHPRED-l2cwp_A0.3240.9823.907threading_5MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDG-KVYLIPVPEEVPVGARV-
6HHPRED-g2cwp_A0.3210.9913.216threading_6MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
7SP32cwpa0.3210.9914.539threading_7MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
8SAM-T991pybA0.2800.9734.118threading_8-ALIGIEDFLKVDLRVAKVLSAERVEGSEKLLKLTLSLGDEERTVVAGIAKYYTPEELVGKKIVIVANLKPRKIFGIESQGMILAASDGE--NLSVIVPDRDVKEGAKLS
9MUSTER2cwpA0.3210.9914.434threading_9MELYDVDEFWKFQMKVGLVKKAEKIKRTKKLIKLIVDFGNEERTIVTGIADQIPPEELEGKKFIFVVNLKPKKFSGVESQGMLILAETEDGK-VYLIPVPEEVPVGARVW
10SPARKS2q2ha0.2840.9914.538threading_10SGEISYADFEKVDIRVGTIVEAVPFPEARKAIKVKIDFGPEIKKSSAQITVHYTPESLVGRQVLGVVNFPPRQIGPFRSEVLTLGFADANGD-IVLAAVERPVPNGEKMC

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.891 to 1mkhA
TM-score=0.985 to native
SCOP code=b.40.4.4
TM-score=0.427 to 1nzyB
TM-score=0.206 to native
SCOP code=c.14.1.3
TM-score=0.857 to 1mkhA
TM-score=0.847 to native
SCOP code=b.40.4.4
TM-score=0.857 to 1mkhA
TM-score=0.847 to native
SCOP code=b.40.4.4
TM-score=0.891 to 1mkhA
TM-score=0.985 to native
SCOP code=b.40.4.4

  Experimental Structure

Download 3ersX
SCOP code=b.40.4.4