Template-based Modeling Results for YHDT_ECOLI

Submitted Primary Sequence

>Length 80
MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA
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--------10--------20--------30--------40--------50--------60--------70--------80

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA
53421121133011010000000000000010122221111001000000000000000000000210022022334435
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--------10--------20--------30--------40--------50--------60--------70--------80

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Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDTRFVQAHKEARWALGLTLLYLAVWLVAAYLSGVAPGFTGFPRWFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA
1	MUSTER	1p49A1	0.207	0.725	1.322	threading_1	FTTGFKRLVFLPLQIVGVTLLTLAALNCL--------GLLHVPLGVFFSLLFLAALILTLFLGFLH--------------
2	SPARKS	2knca	0.229	0.600	1.287	threading_2	--------------------------------GAMGSEERAIPIWWVLVGVLGGLLLLTILVLAMKVGFNRPPLEEDDEE
3	PPA-I	1p49A1	0.103	0.725	2.589	threading_3	--------FTTGFKRLVFLPLQIVGVTLLTLAALNCLGLLHVPLGVFFSLLFLAALILTLFLGFLH--------------
4	PPA-I	2kncA	0.208	0.600	1.866	threading_4	--------------------------------GAMGSEERAIPIWWVLVGVLGGLLLLTILVLAMWKVRNRPPLEEDDEE
5	PPA-I	1w5cF	0.216	0.463	1.525	threading_5	---------------------------------EPVSYPIFTVRWVAVHTLAVPTIFFLGAIAAMQFIQR----------
6	PPA-I	1y04A	0.273	0.412	1.307	threading_6	MNAPARAAAKTAADALAAAKKTAADAAAAAAAA-----------------------------------------------
7	PPA-I	3dinE	0.145	0.775	1.256	threading_7	-----HTIISVALIYMVQVQMSKFSELGGAFGSGGLHTVFGRRKGLGKITLVLSVLFFVSCVVTAFV-------------
8	MUSTER	2ahzA	0.187	0.938	0.946	threading_8	MLRACLRAWKDKEFQVLFVLTILTLISGTIFYSTGLRPIVGDPDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP-----
9	SPARKS	2amwa	0.177	0.775	0.946	threading_9	------MQHLEAVRNILGDVL---NLGERKHTLTASSVLLGIPE-------LDSMAVVNVITALEEYF--DFSVDDDEIS
10	PROSPECT2	1r5iD2	0.100	0.875	0.586	threading_10	NKNFQELWDKAVKLTKEMKIK----------LKGQKLDLRDGEVAINKELWWFRSLLVKGVYLIKRYYEGDIELKTTSED

Predicted Tertiary Structure


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TM-score=0.659 to 1p49A SCOP code=c.76.1.2	TM-score=0.825 to 1p49A SCOP code=c.76.1.2	TM-score=0.453 to 1kd9A SCOP code=h.1.3.1	TM-score=0.825 to 1p49A SCOP code=c.76.1.2	TM-score=0.502 to 1vdfA SCOP code=h.1.7.1