Template-based Modeling Results for YJDP_ECOLI

Submitted Primary Sequence

>Length 109
MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDRGRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERRMEDEYGR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDRGRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERRMEDEYGR
CCCHHHHHHHHHHHHHCHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDRGRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERRMEDEYGR
5531111111000101101011100310011012001321333423323323331132412233332233334213323431333334133334413333342233235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRFPLFLLFTLLTLSTVPAQADIIDDTIGNIQQAINDAYNPDRGRDYEDSRDDGWQREVSDDRRRQYDDRRRQFEDRRRQLDDRQRQLDQERRQLEDEERRMEDEYGR
1	MUSTER	3u1aA	0.185	0.743	1.064	threading_1	--------------------HMDAIKKKMQMLKLDKENALDR--------AEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK
2	HHPRED-l	1dbg_A	0.120	0.761	1.093	threading_2	-----------------------QVVASNETLYQVVKEV-KPGGLVTYKDVQL-IVSNSGKSGLPKALNPGKVFFTGDAKELRGEHLILEGKDIQAWKSHGPLVAIYG-
3	MUSTER	2xnxM	0.127	0.936	1.004	threading_3	LEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQ---DYNRANVLEKEL-EAITREQEINRNLLGNAKLELDQLSSEKEQLTIEKAKLEEEKQIS---
4	MUSTER	2b5uA3	0.174	1.000	0.953	threading_4	QERQAKAVQVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGKAQRAQTDNKQAAFDAAAKEKSDADAALSSAMESRKKKEDKKRSAENNLNDEKNK
5	SPARKS	1gzga	0.174	1.000	0.709	threading_5	VLNDVSIDVLVRQALSHAEAGAQVVDGRIGAIREALESAGHTNVRAKYASAYYGPFRDAVGSASNLGKGNKATQMDPANSDEALHEVAADLAEMPYLDIVRRVKDEFRA
6	PROSPECT2	1l8dA	0.160	0.917	0.843	threading_6	KKELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHRE---ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIKR------L
7	PPA-I	1l8dA	0.150	0.917	0.827	threading_7	LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREEL--LSKYHLDLNNSKNTLAK-LIDRKSELERELRRIDMEIKRL------
8	HHPRED-l	1jb0_F	0.140	0.523	0.754	threading_8	----------------------DVAGLVPPAFQKRAAAAVNTTADP----------------------ASGQKRFERYSQA------LCGEDGLPHLVVDGRLSR-AG-
9	HHPRED-g	1jb0_F	0.100	0.367	0.492	threading_9	----------------------DVAGLV-------------PCK----DSPAFQKRAA----AA--------------------VNTTADP------ASGQKRFERYSQ
10	SP3	1ek8a	0.193	1.000	0.737	threading_10	MDKCVEAFKTQISKIRTGRASPSLIDRSSPAVEKAIMASDNPNSAGSDTEERRKDLTKIVRGQARVAVRNVRRDANDKVKALDDDRRSQDDVQKLTDAAIKKIEAALAD

Predicted Tertiary Structure


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TM-score=0.620 to 1urqA SCOP code=h.1.15.1	TM-score=0.458 to 1g9uA SCOP code=c.10.2.6	TM-score=0.564 to 2r2vA SCOP code=h.1.3.1	TM-score=0.639 to 2b5uA SCOP code=b.101.1.1	TM-score=0.673 to 1e1rG SCOP code=c.49.2.1