Template-based Modeling Results for YMFM_ECOLI


  Submitted Primary Sequence

>Length 112
MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
CCCCCHHHHHHEEEEEECCCCCEEEEEEEEECCCCCCEEEEECHHHHHCCCCCCCCEEEEEHHHCCCCEEECCCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCCEEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
5531222123010010102213020100000203232200100001110121233211000130221220123022221122342311121011121312132310012334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMNSLTTHYRRSQLIALPVPGGKAKVEYCYAVNVPGDREIVTHSFAEWAVGDFNRQKETVLCDKLTAGSKITTECPSESFVGSRKHNGLSTSAKVMSMNASARSNSFVVNSGK
1MUSTER2b8aA0.1780.9020.624threading_1MSR-QKEYKCGDLVFAKMKG---PHWPARIDEMPEAA--VKSTANKYQVFFFG-THETAFLGP----KDLFPYEESEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKK
2SPARKS1iray0.1161.0000.524threading_2EQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR
3PROSPECT23tonA50.0830.9730.557threading_3EPALNTHLSRQKFKIALDDEGTAGGWLLASFSASQNTMQSHIIFNNYITGTNPLKLGYIEIWGVGSVPVTSVSISVS---GMVITPSFNNDPTTQVLSIDVTDRNISLHNFT
4PPA-I2b8aA0.1780.9020.565threading_4MSRRQKEYKCGDLVFAKMKGYPARIDEMPEAAVKSTANKYQVFF----FGT----HETAFL---GPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKK
5HHPRED-l3jwd_A0.2440.8040.903threading_5ASKLREQFG----------NNK-TII--FKQSSGGDPEIVTHWFNC--------GGEFFYCNSLFGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSEIFRPGGG-
6HHPRED-g3fhd_A0.1950.6880.702threading_6CDPIYAAYQRDFFYSISKPA----VEYVGLGKLPSESDYLVAYDQEWEAC----RKLT--P-----LHN--------------------LIRECILHNSTTESDVYVLTRGQ
7SP31r5ja0.1480.9640.470threading_7IHSTADTVRPALQIIKTKPGIS-RTSGVFLNRENTSE---RYVFADCAINIDPTAQELAEIAVNTAEDIDPKIALSFSTKGSGKAPQVDKVREATEIATGLNPDLALDGELQ
8SAM-T991cttA0.2750.7140.451threading_8MNEL--NSGLDLRIHLPGREAHALRDYLPDAFGPKDLEIKTLLMDEQDHGY------------------------------ALTGDALSQAAIAAANRSHMKSPSGVALECK
9MUSTER3es4A0.1490.9020.568threading_9IFNISD---DVDLVPAPAEGGGSYRRQIWQDDVENGTIVAVW--AEPGIYNYGRDLEETFV--VVEGEALYSQADADPVIGPGSAKGVPS---RLEILSSFRKLATVIPKP-
10SPARKS2pia_0.1310.9550.499threading_10QGAPLPPFEAGANLTVAVPNGS-RRTYSLC-NDSQERNRYVIAVK--RDSN-GRGGSISFIDDTSEGDAVEVSLPRNEFPLDKRAKSFITPMLSMARQLRAEGLRYLTRDPE

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.396 to 1dubA
SCOP code=c.14.1.3
TM-score=0.818 to 2b8aA
SCOP code=b.34.9.2
TM-score=0.655 to 1n10A
SCOP code=b.7.3.1
TM-score=0.615 to 1iraY
SCOP code=b.1.1.4
TM-score=0.502 to 1nofA
SCOP code=b.71.1.2