Template-based Modeling Results for YNAK_ECOLI


  Submitted Primary Sequence

>Length 87
MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
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--------10--------20--------30--------40--------50--------60--------70--------80
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
CCCCCEEEEEEHHHCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCEEEECHHHHHHHHHCCCCCCCEEEECCCCHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
554322112020320121231123222310320030024111211000133010000200010022151320200012222332435
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--------10--------20--------30--------40--------50--------60--------70--------80
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSEKLKIVYRPLQELSPYAHNARTHSTEQVAQLVESIKQFGWTNPVLIDEKGEIIAGHGRVMAAEMLKMDSVPVIVLSGLTDEQKQR
1MUSTER1vz0B0.3120.9202.461threading_1------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRDGYELVAGERRYRAALMAGLQEVPAVVKD-LTDREALE
2SPARKS1vz0a0.2840.9312.527threading_2------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALEL
3PROSPECT21xw3A0.1670.9661.161threading_3SGRIAAVHNVPLSVLIRP--LPSVLDPAKVQSLVDTIREDPDVPPIDVGDYFYSFGGCHRYAAYQQLQRETIPAKLVQ-STLSDLRQ
4PPA-I1vk1A20.1570.9543.604threading_4----IPVKKVEYVFIELDKMPHEQLVQRELEDFIESVTGSGFWKPMLLADEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVY
5HHPRED-l1vz0_A0.3160.9084.776threading_5------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRPGYELVAGERRYRAALMAGLQEVPAVVKD-LTDREAL-
6HHPRED-g1vz0_A0.2840.9314.159threading_6------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRPGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALEL
7SP31vz0a0.2840.9312.628threading_7------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALEL
8SAM-T991vz0B0.2840.9313.975threading_8------VVRLPLASIRPNPRQPRKFAEESLKELADSIREKGLLQPLLVRDGYELVAGERRYRAALMAGLQEVPAVVKDLTDREALEL
9MUSTER1vk1A20.1980.9311.992threading_9IPKKVEYVFIELDKM------PHQLVQRELEDFIESVTGSGIWKPMLLADEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVY
10SPARKS1vk1a0.1980.9311.721threading_10PVKKVEYVFIELDKM------PHELVQRELEDFIESVTGSGIFKPMLLADEYLIVDGHHRWAGLQKLGAKRAPSVILDYFDEGVKVY

  Predicted Tertiary Structure

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TM-score=0.520 to 1vz0B
SCOP code=a.4.14.1
TM-score=0.738 to 1vk1A
SCOP code=d.268.1.2
TM-score=0.529 to 1vz0B
SCOP code=a.4.14.1
TM-score=0.702 to 2b6fA
SCOP code=d.268.1.4
TM-score=0.752 to 1vk1A
SCOP code=d.268.1.2