Template-based Modeling Results for AROK_ECOLI

Submitted Primary Sequence

>Length 173
MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIHMLESN
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIHMLESN
CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCEEEHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCEEEECCCCEECCHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIHMLESN
55433100000020001000020002203120000021013313130120032222300231122002201332100000110001143002102120000002010320121033233212232322132102100220130033001010203331031002201211345
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAKVVANQIIHMLESN
1	MUSTER	3trfA	0.446	0.971	3.318	threading_1	L---TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKMRRPLFIK-NNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQ-
2	SPARKS	3trfa	0.446	0.971	4.160	threading_2	---LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQEMRRPLFIKN-NSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQ-
3	PROSPECT2	3trfA	0.446	0.971	3.450	threading_3	L---TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIKGEMRRPLFIKN-NSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIK-Q
4	PPA-I	3trfA	0.446	0.971	3.382	threading_4	---LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQEMRRPLFIKN-NSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQ-
5	HHPRED-l	1kag_A	1.000	0.913	1.976	threading_5	--EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLART------PLLHVETPPREVLEALANERNPLYEEIADVTI-----SAKVVANQIIHMLE--
6	HHPRED-g	2iyv_A	0.363	0.971	2.564	threading_6	---APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGGGAVTSPGVRAALA-GHTVVYLEISAAEGVRRTGGNTVRPLLAG-PDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVP
7	SP3	3trfa	0.446	0.971	4.308	threading_7	L---TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQEMRRPLFIKN-NSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIKQ-
8	SAM-T99	3trfA	0.449	0.965	4.020	threading_8	---LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGERPLFIK-NNSKEKLQQLNEIRKPLYQAMADLVYPTDDLNPRQLATQILVDIK--
9	MUSTER	1kagA	0.987	0.913	3.005	threading_9	--EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLAR------TPLLHVETPPREVLEALANERNPLYEEIADVTIS-----AKVVANQIIHMLE--
10	SPARKS	3vaaa	0.294	0.983	3.905	threading_10	--AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAKQRPILQGKEDLMDFIIQALEKRAPFYTQ-AQYIFNADELEDRWQIESSVQRLQEL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.852 to 1kagA TM-score=0.888 to native SCOP code=c.37.1.2	TM-score=0.855 to 1kagA TM-score=0.891 to native SCOP code=c.37.1.2	TM-score=0.851 to 1kagA TM-score=0.888 to native SCOP code=c.37.1.2	TM-score=0.849 to 1kagA TM-score=0.885 to native SCOP code=c.37.1.2	TM-score=0.851 to 1kagA TM-score=0.888 to native SCOP code=c.37.1.2

Experimental Structure

Download 1kagA

SCOP code=c.37.1.2