Template-based Modeling Results for COBS_ECOLI


  Submitted Primary Sequence

>Length 247
MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL
CHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL
2032010000000200013312321223101200100000000000000000000311011100000000000000000001000000100012313320120131031001000000000001000002012212100000000000000000000110320334120211123231331000000000000011100100000000000000001001320200001001000100100000112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLLGAISGLVFMVLQAWCGAPLAALFSVLVLVLMTGGFHLDGLADTCDGVFSARSRDRMLEIMRDSRLGTHGGLALIFVVLAKILVLSELALRGESILASLAAACAVSRGTAALLMYRHRYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQLLKRTLGGQTGDTLGAAIELGELVFLLALL
1PROSPECT23a0oA30.1170.9721.314threading_1NHCGWAEFYPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAEAGFRVVVALAWGYDWLYDHLSEDERRTVRS-------VLLERTREVADHVIHAVRSLSAVLTPACIALAGEWLDYTVEFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMYNYGWWDLNFDDLVYRHDY
2PROSPECT22bkuB20.0960.9721.305threading_2TSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLADMLMGLFFRLLEKKDSAFIEDDVFYAISALAAS--LGKGFEKYLETF-----SPYLLKALNQVDSPVSITAVGFIADISNSNVLAQMISNPPAVLSVFNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAWVIDYI
3PROSPECT21ee4a0.1091.0001.282threading_3QLSATVKFRQILSREHRPPFMRENQPEMLQLEAAWALWALGNVAGDSTDYRDYVLQCNAKPSLIRTATWTLSNLCRGWSVVSQALPTLAKLIYSMDTETLVDACWASDGPQEAIQAVIDVQTPALRAVGNIVTGNDLQTQVVINAGVLPKKEACWTISNITAGNTEQIQAVIDANLVAEDKTKKEACWAISNASSGGLNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQ
4PROSPECT23swhA0.1200.9471.252threading_4VFSQLNQSFEIIKKLECP-------DPQIVGHYMRRFATISNVLLQYADIVSKDFASYCSKEKEKVPCILMNNTQQLRVQLEKMFEAMGGKELDAEASGTLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILSQVKSVAQDADNVLQPIMDLL------DSNLTLFAKICEKTVLKRVLKELWKLVMNTMERTIVLPPCAVVELALDTIKQYFHAGGVGLKKTFLEKSPDLQSLRYALSLY
5PROSPECT23kb9A0.0950.9351.237threading_5YWPKLQTTRTWLLEKRLMPGYYLGAPDEVLQAIADYS-----AWFFVWDDRHDRDIVHGRAGAWRRLRGLLHTALDSPGDHAGFADSVRRLYAFLPATWNARFAR-------HFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCE----LPDAVRKHPAYRRAALLSQEFAAWYNDLCSLRRRVEECITEFLAVERDALRFADELADGTVRGKELSGAVRANVGNMRNW
6MUSTER3a0oA0.1160.9760.790threading_6WAEFYEKSVEPWLERPVMPEPQPYPNNTRVATLWRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAAGATSVVALAWGYDWLYDHLSEDERRTVRS---VLLERTREVADHVIAHSHAVRSLSAVLTPACIALDEAGEWLDYTVEFLATLYPWAGTDGGWA---EGPHYWMTGMAYLIEAANLIRSYIGYDLYQRPFFQNTGRFPLYTKAPGTRRANFGDDLPGLKLGYNVRQFAGVT
7SPARKS2xwub0.1130.9720.969threading_7YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLPVM------INSVLPLVLHALGNPELSVSSVSTLKKICRECKYAANIVAVSQDVLMKQKTSQCMWLMQASALQVEEILKNLHSLISPIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHPNPQLIQKVLSKWLNAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYSSALDLTRQLVHIFA-HEPAHFPPIEALFLLVTSVTLT
8PROSPECT21ejlI0.1180.9921.225threading_8QLQATQAARKLLSREKQPPILGKTDCSPIQFESAWALWALGNIAGDGSAFRDLVIKHGAIDPLCGYLRNLTWTLSNPLDAVEQILPTLVRLLHHNDPEVLADISYLTDGPNERIEMVVPIVTPALRAIGNIVTGTDEQTQKVIDAGALAQKEATWTMSNITAGRQDQIQQVVNHGLKADFKTQKEAAWAITNYTSGGTVEQIVYLVIIQVILDAISNIFQAAEK--LGETEKLSIMIEECGGLDKIE
9PPA-I1pw4A20.1050.7690.938threading_9NVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM------------NPAGNPTVDMICM-----IVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIV---------GYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVP-------------------------------
10HHPRED-l1m0f_B0.2040.1980.745threading_10----------------------------------------------------------------------------------------------------------------------------------------------------------------------------ME-------------------QLTKNQRK------KRDEIEAGKSYCSRRFGGATCDDKSAQIQPAEFYRFHDE-

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.396 to 1xl7B
SCOP code=c.43.1.3
TM-score=0.570 to 1j0nA
SCOP code=a.102.3.2
TM-score=0.456 to 1pw4A
SCOP code=f.38.1.1
TM-score=0.722 to 3ea5B
SCOP code=a.118.1.1
TM-score=0.576 to 1ialA
SCOP code=a.118.1.1