Template-based Modeling Results for DPPB_ECOLI

Submitted Primary Sequence

>Length 339
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
211100210010000000000000000200210001100123211231012003301022100100020000002011010132422012201210211122010111111010100001011442210110010001001000100000000000012031010112112211222122220111001111121210010000000000000000000001000010031012200100312203311000000031000000000001001001000000000001000100010023211100100000000000001000000000011313334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGISPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLELGVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHWNLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLAVIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLAGAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPRIRHKK
1	MUSTER	1u6gC	0.130	0.956	0.812	threading_1	MLPEFYKTVSPALISRFNVKADVFHAYLSL-ETPLTML---QSQVPNIVKALHKQMKEKSVTRQCCFNMLTELVNV-LPGALTQHIPLVPGIIFSLN-SSNLKIDALSCLYVILCN------HSPQVFHPHVQALVPPVVACVPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDL--FTCTIKRLKAA-QEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSADILIKNYSLTAAMIDAVLDEDMHVSQMAISFLTTLAISGSILNELIGLVRSPLLQGGA
2	SPARKS	2onkc	0.122	0.723	1.131	threading_2	------MRLLFSALLALLSSIILLFVLL-----PVAATVTLQLFNFDEFLKAASD----------------------------------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFPGK-SVVEGIVDLPVVIPHTVAGIALLVVFG-------SSGLIGSFSPLKFVDALPGIVVAMLFVS------------------------VPIYINQAKEGFAS-VDVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISGAVVPMI------APTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG----------
3	PROSPECT2	1ejlI	0.094	0.973	1.575	threading_3	SVEDIVKGINSNLESQLQATQAARKLLSREKQPPIDNIIRAGL-----IPKFVSFLGKTDCSPIQFAWALTNIASGTEQTKAVVDGGAIPAFISLLPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGDEQTQKVIDAGALAVFIQKEATWTMRQDQIQQVVNHGLVP---FLVGVLSKADFKTQKEAAWAITNYTSTVEQIVYLVHCGII-EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLSIMIEECGNESVYKAS
4	PPA-I	2onkC	0.108	0.740	1.576	threading_4	------MRLLFSALLALLSSIILLFVLL-----PVAATVTLQLFNFDEFLKAASD----------------------------------PAVWKVVLTTYYAALISTLIAVIFGTPLAYILARKSFP-GKSVVEGIVDLPVVIPHTVAGIALLVVFG----------------SSGLIGSFSPLKFVDA---------------LPGIVVAMLFVSVPIYINQAKEGFASV-DVRLEHVARTLGSSPLRVFFTVSLPLSVRHIVAGAIMSWARGISEFGAVVVIAYYPMAPTLIYERYLSEGLSAAMPVAAILILLSLAVFVALRIIVG----------
5	HHPRED-l	3tui_A	0.201	0.617	4.854	threading_5	-----------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSI---------------------------------------GLQAAIVPLTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG-AVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR------
6	HHPRED-g	3tui_A	0.215	0.617	4.833	threading_6	-----------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGT---S----I-----------------------------GLQAAIVP---LTVGAAPFIARMVENALLE-IPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGG-AVGAGGLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGDRIVRAVTR------
7	SP3	3tuia	0.215	0.617	1.616	threading_7	-----------------------------------------------------------------------------------MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVRPGAKLYRTVSAIVNIFRSIP-FIILLVWMIPFTRVI---------------------VGT-SIGLQAA--------------IVPLTVGA--APFIARMVENALLEI-PTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGYSAMGGAVGAG-GLGQIGYQYGYIGNATVMNTVLVLLVILVYLIQFAGDRIVRAVT---R---
8	SAM-T99	2qh9A	0.146	0.466	0.617	threading_8	-DSFDDRKCCVVGCVTCGGYVEGFLYTEID--------IDGLDATDKLISVRRSKF-----------------------------------------------REQIKCIFLPGITLGGFNLVDIQRVYRETKIPVVVVRRKPDEEFDSARNLENYELRRKIVEVAGEIH------------------------------------------------------------RIGDIYIQTAGLTPSEAEKLVKASLIKGNPEPV------RISHLVASAII-----------------------------------------------------------
9	MUSTER	1wa5C	0.110	0.965	0.775	threading_9	PHIILRVDAIKYIYTFKAQLIELMPILATFLQTVVYTYAHKEDISNSTEILLKNLIALSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAPRFTHYTFESIGAILNYTQRQNLLVDSMMPTFLTVFS-FIPYVFQIIAFVVEQSA-TIPESIKPLAQPLLAPNVWELKGTRLLKSFIKPDLVPVLGIFQRLIASYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQR-LQNSK------TERYVKKLTVFFGLISNKLGSDFLI-DEV--QDGLFQQIWGNFIITTLALIGVLNMVINGQFFQSKLISSTMNSIIQSIANLKN
10	SPARKS	3d31c	0.094	0.723	0.990	threading_10	---------------------------------PLTFVFS-FLLLVLFLFIFLTLSNMIFEQITEDFSGLVKAAG-N------------RSVISSIFLSLYAGFLATLLALLLGAPTGYILARFDFPG-KRLVESIIDVPVVVPHTVAGIALLTVFG-------SRGLIGEPLESYIQFRDAGIVVAMLFVS------------------------MPYLANSAREGFKS-VDPRLENAARSLGAPLWKAFFFVTLPLSARYLLIGSVMTWARAISEFGAVVILYYPMVGPTLIYDRFISYGLSASRPIAVLLILVTLSIFLVIR--------------

Predicted Tertiary Structure


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TM-score=0.659 to 1ialA SCOP code=a.118.1.1	TM-score=0.405 to 1ysmA SCOP code=a.2.16.1	TM-score=0.676 to 2onkC SCOP code=f.58.1.1	TM-score=0.732 to 1ialA SCOP code=a.118.1.1	TM-score=0.800 to 2onkC SCOP code=f.58.1.1