Template-based Modeling Results for HYBB_ECOLI

Submitted Primary Sequence

>Length 392
MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHEHHHHHHHHHCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
55432322214100300000000000000000100010001012010100000000000000000100000000001002213021001000000000000000000010020000000001111211010000000000000000010010002211032012101100000000000010011000000000001300201211301000000001221101000000001001213122132001200100000000000010010001220000110101000000000000000000102313321300000000000000010000000000111211100202100000000000000000002101001323333334342345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSDLNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLGGLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWKVSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAFIMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLSLAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSLVAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
1	MUSTER	1kpkA	0.118	0.954	0.929	threading_1	LERD-------KTPLAILFMAAVVGTLVGLAAVAFDKGVGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYIPEIEGEDQRPVRWWRVLPVKFFGGLGTLGG--MVLGR-RMVLDIF--RLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKLSDA-PLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFIPIATAGNFMGMLVFIFVARVITTLLCFSSG---PGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAP-VLEMQLILPMIITGLGATLLA-QFTPLYSAILARTLAKQEAEQL
2	SPARKS	1wy0a	0.108	0.686	0.898	threading_2	STEA---VGGDP-LRAIYPAVAIELIHNYSLVHDDIMDM---DETRRGKP-TVHRIWG--VNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQAR--------DLEFEKKSTVT---IEEYMEMISGKTGALFEASAKVGGIIGTDN-EEYIKALSSWGRNVGIAFQIWVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFENAD---------EKDKQRFLKIFGKDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRIPKSKARMDLELLAKFIV---------ERE-----------------------------------------------------------------------------------
3	PROSPECT2	1ejlI	0.088	0.901	1.695	threading_3	GTVNWS---------VEDIVKGISQLQATQAARKLLSREKQPPILGKTDCSPIQFESAWALTNIASGTSEQTKAVVDSLLASPHAHISEQAVLGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLNERIEMVVKKGVVPQLVKLLGATELPI-----VTPALRAIGNIVTGTTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITQIQQVVNLVPFL----VGVLSKADFKTQKEAAWAITNYT---------SGGTVEQIVYLVHCGIIEPLMNLLS------------AKDTKIIQVILDAISNIFQAAKLSIMIEECGGLDKIEALQRHENESVYS
4	PPA-I	3dh4A	0.108	0.944	1.551	threading_4	IYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLTILGIPLMYSILGLALFALVYSIVVWTDVIQVFFLVLG-----GFMTTYMAVSFIGGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLDPQLMASLGDIAATNLPSAAFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQ-EYTGL-----VSPGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKF-----------MPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRS
5	HHPRED-l	2vpz_C	0.154	0.628	7.140	threading_5	---------------------------------AEFYGLP-----NAQEFWHWTNALH-FVLVGLAGGVALLAALLHLKGDAEARRYT----LYALMLIALDLFILWA--ESPARFTHIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLG---K-----GSQ-------RALAWALLVFSLVALSYPGLALAVNLN--RPLWNGL-M-AGLFPLTALVLALGLAALLKSP-------WALFPLRVL---AGASLLLALLYP----LTLP-PEARGHLEEAGWYGLFLLLG---------LGTFWQER----LAPWAGLLAAAG---LRALLVLAGQWQGL---------------------------------------------------
6	HHPRED-g	2vpz_C	0.154	0.630	7.196	threading_6	-----------------------------------AEFYGL---PNAQEFWHWTNALHFV-LVGLAGGVALLAALLHLKGDAEARRYT----LYALMLIALDLFILWA--ESPARFTHIWLFLSFHPTSPIWWGAWGLGLGFLTGGLLYLG--------KGSQ-------RALAWALLVFSLVALSYPGLALAVNLN--RPLWNGL--MAGLFPLTALVLALGLAALLK-------SPWALFPLRV---LAGASLLLALLYPL----TLPPEARGHLLEEAGWYGLFLLLG---------LGTFWQERLAP----WAGLLAAAG---LRALLVLAGQWQGL---------------------------------------------------
7	SP3	3gi8c	0.134	0.916	0.437	threading_7	MELKNKKLSSIFSIFGVGAKGRNLPETFILSGIYALLVLGAKIVSNAGPIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPTASKAVGRAEFFIVLVALLILGLFIGLITIHPSYVIPDLAAVSGMIFASAIFFLSYMG---FGVITNASEHIEKKNVPRAIFISILIVMFVYVGVAILIKASENALAVAA-KPFLGNLGFL-LISIGALFSISSAMNATIYGGANVAYSLAKGELP---EFFERKKSTEGLYITSALGVLFALLFN---MEGVA--SITSAVFMVIYLFVILSHYILIDEVGGR-KEIVIFSFIVVLGVFLLLLY------Y-------QWITNRFVFYGIIATFIGVLIFEIIYRKV------TKRTFSNNMYVKS
8	SAM-T99	2cunA	0.149	0.755	0.561	threading_8	FHNKTVFLRVDLNSPMKGKIISDARFKAVLPTIRYLIESG-------------------------------------------------------------AKVVIGTHQGKPYSEDYTTTEEHARVLSELLD-----------QHVEYIEDIFGRYAREKIKETAHRSQPSLVGFARIKPMI----MGFLMEKEIEALMRAYYSKDSPK-IYVLGGAKVEDSLKVVENVLRRE------------RADLVLTGGLVANVFTLAKGFDLGRKNVEFMKKKGLLDYVKHLSENRGLLYQIMDIGKRTAEKYREILMKARIIVANGGVFEREEFAIGTFSVLGGGHSIASIQKYGITGITTGGGAMLSFFAGEELPVLRALQISYEK-------
9	MUSTER	3gi9C	0.142	0.901	0.880	threading_9	MELKNKKLSGVMIGRNLPETFILSGIYALLVAYSYTK-LGASNAGPGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLIAPIGSKAVGRAEFFIVLVKLLILGLF-AGLITIHPSYVIPDLAAVSGMIFASAIFFLSYMGFGVITNA----H---IENPKKNVPRAIFISILIVMFVYVGVAISAIGIDELIKASENALFLLISIGALFSISSAMNATYGGANVAYSLAKDGFERKVWFKSTEGLYITSALGVLFALLF-----------NMEGVAS--ITSAVFMVIYLFVILSHYILIDEVGGR--KEIVIFSFIVVLGVFLLLL-----------YYQWITNRFVFYGIIATFIGVLIFEIIYRKV----TKRTFSNNMYVKSLES
10	SPARKS	1e9ra	0.113	0.811	0.876	threading_10	VGQGEFPFGTRIVS--------------GGKLKRMTREKAKQVTVAGVMPRDAEPRHLLVNGTGTGKSVLLRELAYTGLLRGD------RMVIVDPNG------DMLSKFGRD----KDIILNPYDQRTKGWSFFNEIRNDYDWQRY--ALSVVPRGKTDEAEEWASYGRLLLRETAKKLATPSMRELFHWTTIATDDLRGFLEGTL-------------------------AESLFAGSNEASKALTSARFVLSDKLPEHVTFSIRSWLEDPNGGNLFITWREDM-----------------GPALRPLISAWVDVVCTSILSLPEEPKRRLWLFIDELASLEKLASLADALTKGGLRVVAGLSTSQLDDVYGVLGGSRTDPKTNEDMSLS

Predicted Tertiary Structure


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TM-score=0.816 to 1kpkA SCOP code=f.20.1.1	TM-score=0.504 to 2q6hA SCOP code=f.54.1.1	TM-score=0.670 to 2q80A SCOP code=a.128.1.1	TM-score=0.812 to 1ialA SCOP code=a.118.1.1	TM-score=0.512 to 2q6hA SCOP code=f.54.1.1