Template-based Modeling Results for LIPA_ECOLI


  Submitted Primary Sequence

>Length 321
MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHCCCHHHHHHHHHHCCCCEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK
553322234223243233112031322223432224203101021223223020012003521012002302010011002210000001121012302103123232221223101200200121222000000012222532103100100200243133020100011131313200200120111000110210220143022202132003002202412231212000000012113201200210251101000012102113320201110122102101100331112100000001001202220312334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK
1MUSTER1r30B0.1500.8290.961threading_1------------------------------HRPRWTLSQVTEL-KPL-LDLLFEAQQVHRQH---------FDPRQVQ-----STLLSIKTGACPEDCKYCPQSRYKTGLMEVEQVLESARKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDA--GIKVCSGGIVGLGETVKDRAGLLLQLANLPPESVPINMLVKPLADNDDVDRIMMPTSYEQTQAMCFMAGANSIFYGLLTTPNPEEDKDLQLFR-K
2SPARKS1r30a0.1570.8322.533threading_2------------------------RPRWTLSQELFEKP---------LLDLLFEAQQVHRQH---------FDPRQ----VQVSTLLSIKTGACPEDCKYCPQSSRAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG--IKVCSGGIVGLGETVKDRAGLLLQLANLPPESVPINMLVKPLADNDDVDRIMMPTSYEQTQAMCFMAGANSIFYGLLTTPNPEEDKDLQLFRKL
3PROSPECT21r30A0.1520.8383.029threading_3------------------------------------RPRW----TLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQV----STLLSIKTGACPEDCKYCPQSSRYKTGMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG--IKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMQQT
4PPA-I1r30B0.1330.8411.404threading_4------------------------------HRPRWTLSQVTELFEKPLLDLLFEAQQVHRQH---------FDPRQ----VQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEVEQVLESARKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGVKAMGLEACMTLGT-----LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG--IKVCSGGIVGLGETVKDRAGLLLQLANLPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMTSYVRLSAGREQMNEQTQAMCFMAGAN
5HHPRED-l2qgq_A0.1370.6604.322threading_5--------------------------------------------------------------------------------EERPYAYVKISDGC-------------GSLRSRSIITREVEDLLKEGKKEIILVAQDTTSYGIDLKQALPDLLRRLNSLNGEFWIRV-YLHPDHLTEEIISA-LELDVKYFDVPVQHSDKILKL-GRTKSSEELKK-LSSIRERFPDAVLRTSIIVGFGETEEDFEELKQFVEEIQFDKLGAFVYSD----------KVDPE-AEELLLLQAEISNRFVGEGKVGRTWTEAPEFVRGLEV-
6HHPRED-g1r30_A0.1570.8132.894threading_6------------------RPR----WTLSQVTELFEKP--------L-LDLLFEAQQVHRQH-----------------FDPRQVLLSIKTGACPEDCKYCPQSRYKAERMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDA--GIKVCSGGIVGLGETVKDRAGLLLQLANLPTESVPINMLVKVKGTPLADNDDVDAFDFI--RTIAVAIMMPTRLSAG--REQMNEQTQAMCAGAN
7SP31r30a0.1500.8322.439threading_7------------------------------------RPRWTLSQV----TELFELLDLLFE--AQQVHRQHFDPRQVQV----STLLSIKTGACPEDCKYCPQSSRAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANTPPESVPINMLVKPLADNDDVDRIMMPTSYEQTQAMCFMAGANSIFYGLLTTPNPEEDKDLQLFRKL
8SAM-T993iixA0.1750.8351.523threading_8TGREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF--------------------------------SNVCRKNCLYCGLRRDNRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYMPD--------VISDIVKEIKKMGVAVTLSLGEWPRE-YYEKWKEAGADRYLLRHETAPVLHRKLRPDTSFENRLNLL-TLKEL--GYETGAGSMVGLGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPD---------TPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPG
9MUSTER3t7vA0.1500.8500.779threading_9----------------------------SLGDKVIEGYQL-------TDNDLRTLLSLESKEGLERLYSAAR---VRDHYGNRVFLNCFIT-YCKNQCSFCYYNCRNEYRLTMEEIKETCKTLKGAGFHMVDLTMGEDP-YYYEDPNRFVELVQIVKEELGPIMISP------GLMNATLLKAREKGANFLALYQETYTELYRKLRVGQSFDGRVNARRFAKQQG--YCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPPLEGFRDKSRLMFPKEGIDGMVLRLNAGANIVTSIPSQLEGVAIKSVVRRLEIM
10SPARKS3ciwa0.1390.8542.428threading_10----------------------------MTGREILEKLE----RREFTREVLKEALSINDRGFNEALFKLAD--EIRRKYVGDERAIIEFSNVCRKNCLYCGLRRDNKNRMTPEEIVERARLAVQFGAKTIVLQSGEDPYMP----DVISDIVKEIKKMGVAVTLSLGEWP-----REYYEKWKEAGADRYLLRHETAPVLHRKLRPDTSFENRLNLLTLKE---LGYETGAGSMVGLGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILPDSNIPATT-AMGTIVPGGREITLRCG

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.792 to 1r30B
SCOP code=c.1.28.1
TM-score=0.792 to 1r30B
SCOP code=c.1.28.1
TM-score=0.794 to 1r30B
SCOP code=c.1.28.1
TM-score=0.778 to 1r30B
SCOP code=c.1.28.1
TM-score=0.805 to 1r30B
SCOP code=c.1.28.1