Template-based Modeling Results for LNT_ECOLI

Submitted Primary Sequence

>Length 512
MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
45121111220010000000000000000111000000000000000012221110000000000000000000000010211201000000000000000000000000001201332210000000000000000010101100000000001110112000200001000000000000001000221010000000000000002102222343332010000102023224223210220021012002312230100000221023132223200210110033311100000010323433421000000000422222221121001010011122121320021002101122221131222212121310200000001000020022004231100000011011121101111000010101321100010021000000013020002033222100102021222200002001000000000000000011133345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
1	PROSPECT2	3q3eA	0.070	0.943	1.748	threading_1	TMFEAAVAAKDYEKACSELLLILSQLDSNFGGIFCTRMATAITTLFSDPVLEISDLGVQRFLVYQRWLALIFASSPRKNSLEIHLDSSKSSLIKFCIVMWNISPELCASLCFALQSPRFIGTSTAF--NKRATILQWFPRHLDQLKNLNNIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYG----------------WKDRDVAHIGYRNNKPVMVVLLEHFHSAH-------SIYRTHSTSMIAAREHFYLIGLGSPSVLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMSNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVGSEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAAKVKVHFHF----ALGQSNGITHPYVERFIKSYLGDSATAHPHSPNCDMMVNPFPFGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAEQERLELRRYKE
2	PROSPECT2	1w36B1	0.065	0.928	1.662	threading_2	MSFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRFQDTDPQQYRIFRRIWHHQPETALLLIGDPAIYAFRGADIFTYMKARSE----------VHAHYTLDTNW-----RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSKGETQPAMKMWLMEGESCGVGDYQSTM------------AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDRLES----DKHLVQIVTIHKS-KGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLD-----LNAAPESVDLAEAERLAEDLRLLYVALALGRLLQKGE
3	SPARKS	1erza	0.169	0.508	3.261	threading_3	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRQMILAVGQ----QGPIARAETREQVVVRLLDMLTKASRGANFIVFPELALPRWHFTDEAELRPLFEKAAELGIGFNLGYAELVV-EGGVKRRFNTSILVDKSG----KIVGKYRKIHLPGHKEYEAY-------RPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFN------------------FKQHRQ
4	MUSTER	2gglA	0.147	0.504	0.930	threading_4	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RQMILAVGQQGPIARAE----TREQVVGRLLDMLTNAASRVNFIVFPELAFPRWHFMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVK-RRFNTSILVDKSG----KIVGKYRKIHLPGHKEYEAYRPF-QHLEKRY------FEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIICGGYNTPTQHDHLTSFHHLLSMQCGSYQNGAWSAAAGKVG-SCIVAPTGEIVALTTTLEDEVITAALDLDR------------------CRELREHIFNFKAHRQ
5	PPA-I	2plqA	0.120	0.537	1.294	threading_5	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRHGDISSSHDTVGIAVVNYKMPRLHTKEVIENAKKIADMVVGMKQGLPGMDLVVFPEYSTMGIMYDPGEETAIFAEACKKADTWGVFSLTGEKHEDHPNKAPYNTLVLINNKG----EIVQKYRKII--PWCPI------------------EGWYPGDTTYVTEGPKGLKISLIVCDDGNYPEIWRDCAMKGAELIVRCQGYMYPA----KEQQIMMAKAMAWANNTYVAVANATGFSAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFRKNAQSQNHLFKLLHRGYTGLINSGEGDRG
6	HHPRED-l	2vhh_A	0.136	0.590	4.006	threading_6	---------------------------------------------------------------------------------------------------------------------------------------------------LKNLNDCLEHLPLKEVK--------------------RILYGVEEQTLPTSAKDIAEGFDIKGYRFEQTRKRRIVRVGAIQNSIVIPTTAIEKQREAIWNKVKTMIKAAEAGCNIVCTQEAWTMPFAFANGPTTKMLAELAKAYNMVIIHSILERDM--EHGETIWNTAVVISNSG----RYLGKHRKNHIPR-------------------------MEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSA--TIGRL-SEPLWSIEARNAAIANSYFTVPINRVGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRPLYAES-FK-------KASEHG-
7	HHPRED-g	2w1v_A	0.160	0.475	3.425	threading_7	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSTFRLALIQLQVS----SIKSDNLTRACSLVREAAK--QGANIVSLPECFNSPYGTTPGESTQKLSEVAKESSIYLIGGSIPEED--A--GKLYNTCSVFGPDGSL----LVKHRKIHLVPGKITFQ--------------ESKTLSPGDSF-STFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPG---AFNLTTGPAHWELLQRARAVDNQVYVATASPAGHSTVVDPWGQVLTKAGT-EETILYSDIDLKKL-AEIRQQI-----------------PILKQKRA
8	SP3	1erza	0.169	0.508	2.346	threading_8	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRQMILAVGQ----QGPIARAETREQVVVRLLDMLTKAASRANFIVFPELALPRWHFTDEAELRPLFEKAAELGIGFNLGYAELVV-EGGVKRRFNTSILVDKSG----KIVGKYRKIHLPGHKEYEAYR-------PFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMSCIVAPTGEIVALTTTLEDEVITAAVD------------------LDRCRELREHIFNFKQHRQ
9	SAM-T99	1f89A	0.209	0.459	2.619	threading_9	-----------------------------------------------------------------------------------------------------------------------S--------------------------------------------------------------------------------------------ASKILSQ-KIKVALVQLSGSSPDKMANLQRAAT---FIERAMKEQPDTKLVVLPECFNSPYSTDQFTSVQFLSNLANKFKIILVGGTIPELDPKT--DKIYNTSIIFNED----GKLIDKHRKVHL-------------------FHE-SETLSPGEKSTTIDT-KYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSA---FNTVTGPLHWHLLARSRAVDNQVYVMLCSPYGHSIVVDPRGKIVAEAGEGEEESFRQAVPLTKQR--------------------------------
10	MUSTER	2plqA	0.125	0.531	0.902	threading_10	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRHGDISSSHDTVGIAVVNYKMPRLH--TKAEVIENAKKIADMVVGMLPGMDLVVFPEYSTMGIMYDPGEETAIFAEACKKADTWGVFSLTGEKHEDHPNKAPYNTLVLINNKG----EIVQKYRKII--PWCPI------------------EGWYPGDTTYVTEGPKGLKISLIVCDDGNYPEIWRDCAMKGAELIVRCQG---YMYP-AKEQQIMMAKAMAWANNTYVAVANATG-SAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFRKNAQSQNHLFKLLHRGYTGLINSGEGDRG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.630 to 1f89A SCOP code=d.160.1.1	TM-score=0.449 to 2bisA SCOP code=c.87.1.8	TM-score=0.596 to 1w36E SCOP code=c.37.1.19	TM-score=0.634 to 2gglA SCOP code=d.160.1.2	TM-score=0.637 to 2gglA SCOP code=d.160.1.2