Template-based Modeling Results for LPOB_ECOLI


  Submitted Primary Sequence

>Length 213
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
553102000000000001101123322223324222332232333232232222223322323333322322242432212100220013111132022110000011213221201012002101300242120100223111201321222322321132201000211112000000012323111020000003101000213322356
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQPVPTVPSVPTIPQQPGPIEHEDQTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSVLLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGTRSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQQ
1PROSPECT21pswA0.0670.9811.300threading_1IPEIGERRKLGHSALVPLFAGIPHRTGWRGERYGLLNDVRVLDKEAWPLVERYIALAYDKGIRTAQDLPQPLLWPQLQVSEGEKSYTCNQ---FSLSSERPIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVLFGSAKDHEAGNEILAALNTLAGETQLDQAVILIAACKAIVTNDVAAALNRPLVAL-YGPSSPDRVIRLITGEGYHQ
2PPA-I2rrlA0.1400.7041.013threading_2----------HMASDDRATGPALTPLVVAAAATSAKVEVDSPPAPVTHGAAMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFSQQVMLFTRQGPEELGQVHISLKLDDNVSPHSHLEAALPMLRTQLAESG-IQLGQSSISSESFAGQQQSSSQQQSSR----------------------------------------------------
3PROSPECT22rrlA0.1270.7041.282threading_3HMASDD----------RATGPALTPLVVAAAATSAKVEVDSPPAPVTHGAAMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFSQQVMLFTRQGQKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESG-IQLG-----------------------------------QSSISSESFAGQQQS-----------------SSQQQSSR
4HHPRED-l3ly7_A0.0830.4511.772threading_4--------------------------------------------------------------------------------------------------LNPRDIDINMVNKSCNSSYAIGVGDLVATSLNTFSTF-MVHDK--------------INYNI-DEPSSSGKTLSIAF-VNQRQYRAQQC-FMSIKLVDNADGSTMLDKRYVITN-
5PROSPECT21jj2c0.0920.9151.194threading_5MTPVRSDLIGKAVRAAQANRKQDYGSDEYAGLRTPAESFGSGRGQAHVPKLDGRARRVPQAVKGRSAHPPKTEKDRSLDLNDKERQLAVRSARGHEFDRDEVPVVVSDDFEDLVK------TQEVVSLLEALDV------------HADIDRADETKIKAGQGSARGRKYRRPASILFVTSDEPSTAARAGADVATASGRLTVFTESAEVAER
6HHPRED-g3ly7_A0.0820.4552.512threading_6--------------------------------------------------------------------------------------------------LNPRDIDINMVNKSCNSWSAIGVGDLVATSLNTFSTF-MVHD--------------KINYNI-DEPSSSGKTLSIAF-VNQRQYRAQQC-FMSIKLVDNADGSTMLDKRYVITNG
7PROSPECT21q74A0.1010.9721.126threading_7ETPESLSNGATIAHYTSRGTCTLGEEGEVIGDRWAQLTADHADQLGGYLGVSAPIYLGGAGRWRDSGMARSQRRFVDADPRQTVGALVAIIRELRP----HVVVTPNGGYGHPDHVHTHTVTTAAVAAAGVHPGYWTVLGLSALISGARALVPDDLRPEWRAAKVAALAAHATQVVVGPTGRAAALSNNLALPI--LADEHYVLAGGSALGFT
8HHPRED-l2hqs_A0.1520.5261.163threading_8---------------------------------------------------------------------------------------V-RIVIDSGVSGRPIG-VVPFQWAGPGAA-PEDIGGIVAADLRNSGKFNPLDRARLPQQP----GSA--QEVQP----AAWSALGIDAVVVGQVTPNDGSYNVAYQLVDTGGAPVLYKVNKQLRY-
9HHPRED-g2hqs_A0.1890.5211.852threading_9-------------------------------------------------------------------------------------------VRISGVDSGRPIGVVPFQWAGPGAA-PEDIGGIVAADLRNSGKFNPLDRARLPQ---QPG-SA--QEVQP----AAWSALGIDAVVVGQVTPNPGSYNVAYQLVDTGGAPVLAQNSYKVNKQ
10PROSPECT21vqwA20.0920.9671.099threading_10LPTIRKPSGLVTAKALLTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLYRDLQTNTPIELGYCDQSFKPQTLQFPHRHTIQEYQRIYAQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVW--SGRLKLPSKEEQLKWQDELFSLSGANNYHATYINKLHDWCKQAT---PVLEEEFPSPYWGEKERSIRENWSIR--AKFFGIE

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.623 to 1pswA
SCOP code=c.87.1.7
TM-score=0.350 to 1v4yA
SCOP code=b.92.1.6
TM-score=0.401 to 2hs5A
SCOP code=a.4.5.6
TM-score=0.436 to 1qe0A
SCOP code=c.51.1.1
TM-score=0.699 to 1ffkC
SCOP code=c.22.1.1