Template-based Modeling Results for LPTF_ECOLI

Submitted Primary Sequence

>Length 366
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHCCCCEEEECCCCCEEEEEEECCCCEEEEEEEEEECCCCCCCEEEEEECCCEEEECCCCCEEEEEECCEEEEECCCCCEEEECCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
321110002200100000000000000012002001200323010110000000000200120000000000000002012200100020011121100100000000000000001210011012111200121323321220231201213311000001213222021000011234242220000022020121432220000120211212222221211323313121133212233322311202211323233110100110000000000000000001222231311000000000000000110021002213010100000000000000000001211101202211243234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
1	PROSPECT2	1jdha	0.103	0.984	1.643	threading_1	IMRSPQMVSAIVRTMQCTAGTLHNLSVLFYAITTLHNLLLHQEGAKMAVRLAGG-LQKMVALLNKVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVILSNLTCNNYKNKMMVCQVGGTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGALCPANHAPLREQGAIPRLVQLLVRAHQDT--QFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLENIQRVAAGVLCELAQD---KEAAEAIEAEGAT
2	PROSPECT2	1ejlI	0.088	0.896	1.601	threading_2	GTIVKGINLESQLQATQAARKLLSNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTSEQTKAVVDAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA--------------------------------------IGNIVTGTDEQTQKVIDAGALAVPSLLTNPKTNIQKEATWTMSNDQIQQVVNLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL
3	PROSPECT2	3a6pA1	0.125	0.874	1.502	threading_3	MDQVNALCEQLVKAVHFGLQILEHVVLKNSVMELIANGTLNILELSRIVVEMIKREPDMLIELDTLSKGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQE----------------------------------------------LQLGAAECLLIAVSRKGKLEDRKPLMVLFGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFLRSSTQMTWGALFRHEILDPLLLAIIPKYLRASMTNLYSRFDFDSDEDFNAFFNSSSTF
4	PROSPECT2	1xm9A	0.068	0.844	1.494	threading_4	GGICKLVDQNVQQAAAGALRNLVFAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRLMGKSKKDATLEACAGALQN--------------------------------------------LTASKGLMSSGMSQLIGLKEKGLPQI--ARLLQSGNSDVVRSGASLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM-----------ASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLELQGVL
5	PROSPECT2	1ee4a	0.096	0.885	1.474	threading_5	QELPQMTQMQEQLSATVKFRQILDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTSAQTKVVVDVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK-----LIYSMDISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRA-------------VGNIVTG------------------------NDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNTEQIQAVILIPPLVKLLEVAEDKTKKEACWAISNASSGGLPDIIRYLVSQGCIKPLCDLLENRIIEVTLDALENILKMGEADKNADFIEKAGGM
6	MUSTER	3v71A	0.095	0.923	0.794	threading_6	ISLEDVLLN-----------QLIDFAIDPSGVKFLEANYPLD-SEDQIRKAVFEKFTESTTLFVGLCH-NGNFIVQKLVELATPAEQREL----LRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMC------TDQISIHVIVVKQLPVDMWT--FFVHFLSSGDSLMAVCQDKYGRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFKSSGIMEMYRDTIIDKCLLRLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSVKDVESNRDALDILLFHQYGNYVVQQMISICTAALLPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIIDSVMRH---
7	SPARKS	3ebga	0.079	0.934	0.719	threading_7	ARILTVVGHEYFHWFQLTLKEGLTVHRENLFSEEMT-----KTVTTRLSHVDLLRSVQFLEDSSPLSHPIRPESYVSMENFYTTTVYDKGS--EVMRMYLTILGEEYYKKGFDIYIKKNTCEDFNYAMEQAYKMKKADNSANLNQYLLWFSQSGTPHVSFKYNYDEKKQYSIHVNQYTKPDENQISVGLINPENGKEMISQTTLELTKESDTFVFNNIAVKPIPSLFRGFSAPV----YIEDQLTDEERILLLKYDSDAFVRYNSCTNIYMKQILMNYNEFLKAKNEKLESFQLTPVN-----------AQFIDAIKYLLEDPHADAGFKSYIPQDRYI--INFVSNLDTDVLADTKEYIYKQIGD
8	PROSPECT2	1hr6b	0.080	0.926	1.471	threading_8	LTIQQGIELEIENRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKENTLPTTHIAIALEGVSWSAPDYFVNWDRAIGTGTNSPSPLAVAASQN---GSLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIEWKRIKSGKISDAEVNRAKAQLKAALL--------------LSLDGSTAIVEDIGRQVVTTGKRLSPEEVFE------QVDKITKDDIIMWANYRLQTSTVPNVSYIEEKLNQ----
9	PPA-I	3snhA2	0.061	0.809	0.974	threading_9	LQMVQQFAVDFEKRIEGSGGARINRIFHERFPFELVKMFDEKELRREISYAIKPDMAFETIVKKQVKKIREPCLKCVDMVISELISTVRQCTKKQY----PRLREEMERIVTTHIRE--REGRTKEQVMLLIDIELAANAILVIRKGWLTINNIGISKEYWFVLTAE----NLSWYKDDEEKEKEYMLSVDNLKLRDVEKSKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAGVYPER-------VGPQLERQVETIRNLVDSYMAIVNKTVRDLM---------PKTIMHLMINNTKEFIFSELLANLYSC--------------------------------------------
10	HHPRED-l	1j4n_A	0.167	0.604	0.530	threading_10	MAKKKLFWREFLAMILFIFISIGSALGFH-YPIKSNQTTGAVQDNVKVS------------LAFGLSI-ATLAQSVGHISGAHTLGLLLSCQISVLRAIM-YIIAQCVGAIVATAILSGI---------------TSSL---------------------------------------PDNSL-----------------GLN----------ALAPGV-------------------------------------NSGQGLGIEI-------IGTLQLVLCVLATTDRRRRDGGSGPLAIGFSVALGHLLAIDPARSFGSTHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSSVKVWTS-----

Predicted Tertiary Structure


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TM-score=0.691 to 1wa5B SCOP code=a.118.1.1	TM-score=0.799 to 1ialA SCOP code=a.118.1.1	TM-score=0.596 to 1u6gC SCOP code=a.118.1.2	TM-score=0.738 to 1xm9A SCOP code=a.118.1.24	TM-score=0.766 to 1ialA SCOP code=a.118.1.1