Template-based Modeling Results for PTYBC_ECOLI

Submitted Primary Sequence

>Length 474
MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD
CCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCCEEEEECCCHHHHHHHHCCCCCEEEEEECCEEEEEECCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD
554320231020002301020001001000000001022231013104313201000122410100002110210030012012222243223221222322324222102200110020011001000000001000000110121113122101100100200020000000000001002202010000000000000000000111220112212112130201000000000000202100331013104201110000000000000000100010120001001111011000000000010000000110000000000222112111000000000100000000121223310220010000000000000000001032120000000000000000000000011101110100000000000112311110000000000000000000000011332324
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVDPNIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQLKAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALNFMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDFFGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIMPLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNSLFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMKPFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAGGILVAWVCGFIFTTLFGCRNVNLD
1	MUSTER	1b3uA	0.109	0.928	1.029	threading_1	QLRLNSIKKLSTIALALGVERTRSELLPFLTDT---IYDELALAEQLGTFTTLVG------------GPEYVHCLLPPLESLA-TVEETVVRDKAVESLRAISHEHS------PSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSAVKAELRQYFRNLCSPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLDSVRLLAVEACVNIAQLLPQ--DLEALVMPTLRQAAE-WRVRYMVADKFTELQKAVGPITKTDLVPAFQNLM-EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD---NQHVKSALASVIMG-LSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN-LDCVNEVIGIRQLSQSL---LPAIVELAEWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY
2	SPARKS	3ipja	0.245	0.198	2.368	threading_2	SNANKYNKIANELIKII-GEDNIISITHCATRLRVMVKDREIIDKKVEKVDEVKGVFFTSGQYQIILGTGIVNKVYAEVEKMGLKTLSKKEQDEL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1b3ua	0.099	0.981	2.102	threading_3	LRNEDVQLRLNTIALALGVERTRSELLPFLTDT---IYDEDEVLLAAEQLGTFTTLVGGPEYVHCLLETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLC------SDDTPMVRRAAASKLGEFAKVLDNVKSEIIPMFSNLASDEQDAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCERENVIMSQILPCIKELVSDHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLTLFCINVLSEVCGQDITTKHMLPTVLRMAVRFNVAKSLQKIGPILDLSLA
4	PPA-I	3ipjA	0.245	0.198	1.183	threading_4	SNANKYNKIANELIKIIGE-DNIISITHCATRLRVMVKDREIIDKKVEKVDEVKGVFFTSGQYQIILGTGIVNKVYAEVEKMGLKTLSKKEQDEL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	1iba_A	0.338	0.162	5.209	threading_5	--------MAPALVAAFGGKENITNLDACITRLRVSVADVSKVDAGLKKL-GAAGVVVAGSGVQAIFGT-KSDNLKTEMDEYIRNFG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	PROSPECT2	1jdha	0.072	0.911	2.026	threading_6	AVVNLIRAI-PELTKLLND-EDQVVVNKAAVMVHQLSKKEASRHAIMRS-----------------------PQMVSAIVRTMQNTNDVETARCSHHREGLLAIFKSGGIPALVKTLHNLLLGAKMAVRLAGGLQKMVALLN------KTNVKFLAITTDCLQILAYGNQESKLIILAVNIMRTYTYEKLLWTTSRVLKVSSNKPAIVEAGGMQAL----GLHLTDPSQRLVQNCLWTLRNLSDGMEGLLGTLVQLLGSDDINVVTCAAGILSNLYKNKMMVCQGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNT-----IPLFVQLLYSPI--ENIQRVAAGVLCELAQDKEAAEAIEAEGARMS
7	HHPRED-g	3ipj_A	0.266	0.198	4.175	threading_7	SNANKYNKIANELIKIIG-EDNIISITHCATRLRVMVKDREIINDKVEKVDEVKGVFFTSGQYQIILGTGIVNKVYAE-VEKMGLKT------LSKKEQDEL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	SP3	3ipja	0.245	0.198	2.273	threading_8	SNANKYNKIANELIKI-IGEDNIISITHCATRLRVMVKDREIIDKKVEKVDEVKGVFFTSGQYQIILGTGIVNKVYAEVEKMGLKTLSKKEQDEL-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	SPARKS	3qnqa	0.136	0.757	1.225	threading_9	--------------------------------------------------------------------------------------------RFLEKYVMPVAGKVAE--QRHLLAIRDGLVLTMPFLIIGSIFPGYSEFMAS--LFGKNWNVALGYPVSAFNI----MALIAVFGIAYRLGEYYKVDALASGALSLVTFLLYIMPGTKESILVDGVIPAALMGSQG-LFVAMIIAIISTEIYRFLVQKVPPAVTRSFA----ALIPGFIVVTVVWIIRLIFFGSIHNVVGKLLQEPLSILIAVILVHVLWACGIHGVMSPIWLSLMDQNGQDVTITAQFFDLWATLALVVGMLLFARS-QQLKSLGRLSIAPGIFNINEMVTFGMNPLLLIPFIVVPVVLT-------IVSYFAMEWGLVARPSGAAVILFSGYLGSGGKISGVILQLVNFALAFVI--YLPFLKIWDKQKIA
10	SAM-T99	3ipjA	0.255	0.198	5.265	threading_10	SNANKYNKIANELIKIIG-EDNIISITHCATRLRVMVKDREIINKKVEKVDEVKGVFFTSGQYQIILGTGIVNKVYAEVEKM-GLK------TLSKKEQDEL------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.836 to 1b3uA SCOP code=a.118.1.2	TM-score=0.811 to 1b3uA SCOP code=a.118.1.2	TM-score=0.385 to 1f9nB SCOP code=a.4.5.3	TM-score=0.795 to 1b3uA SCOP code=a.118.1.2	TM-score=0.384 to 1f9nB SCOP code=a.4.5.3