Template-based Modeling Results for PERM_ECOLI


  Submitted Primary Sequence

>Length 353
MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
CHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHEEECEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
22210121033211111000000000000000100000000000000000002100120231202222110111111101122222221210022012003201200320030012014312211221002100320222022002100310010010001000100000000000021132003002300231021002003200210110010100100000000000000010310000000000011011000000000000000121110110000000000010012000100001311300100000000000000100000000000000100022122232234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLVAIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRDMPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLLTIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVLEMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGTEFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPLATLIKAVIHAWPDGQIAQE
1MUSTER3ea5B0.1260.9661.142threading_1ILEPVLEFVEQNITADNWRNREAAVMAFGSIM----DGPDKVQRTYYVHQALPSILNLMN----QSLQVKETTAWCIGRIADSVAESILPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEAPIYNFYPALVDGLIGAANDNEFNARASAFSALTTMVEYATVAETSASISTFVMDKLGQTMSVDENQLTEDAQSLQELQSNILTVLAAVIRKSPSSVEVADMLMGLFFRLLEKKVFYAISALAASLGFEKY---LETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFMMNVLA-SNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGT
2SPARKS2xwub0.1070.9011.134threading_2VFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALLFDSSVEAIVNA-ISQ---------------------------PDAQRYVNTLLKLIPLVLGLQEQLRQAVQN-GDMETSHGICRIAVALGENHSRALLDQVEQSFLALVNMIMFCSSLTLTFWYTLQDQQVYRPVYFQLVKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLT----SYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLVLPLVL-HALG-NPELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTS
3PROSPECT23a6pA10.0830.9921.792threading_3ALKFCEEFKEKEKTQVAIVRHFGLQILEHVVKFRWNG-MSRLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYAQANCRVGVAALNTLHITAENCKLLEILCLLLQELQLGAAECLLIARKPLMVLFGDVAMHYILSAAHYVFLKRLCQVLCALGNQLCALLGDSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGYLRASMTNLVKMGFPSK--TDSPSCEYSRFDFFNSSRAQQGEVMRLACRKTSFQMAGEWLKYQLSTF
4PPA-I1b3uA30.0870.5181.133threading_4---------------------------------------------------------------------------------------------------------GIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGEKLNSLCMAWLYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG---DPVANVRFNVAKSLQKIGPILDNLQSEVKPILEKLTQDQDVDVKYFAQEALTVLSLA--------------------------------------------------------------
5MUSTER1qgkA0.1130.9801.114threading_5IVPHVLPFIKEHIKNYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM-SVVVRDTAAWTVGR-ICELLPYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVADD--EEPATYCLSSSFELIVQKLLETTNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMER--LQQVLQMESHIQSSDRIQFNDLQSLLCATLQNVLRDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFLLLENLNVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQAS-QAQVDKS
6SPARKS1b3ua0.1100.8751.068threading_6VKAELRQYFRNLCSDDTPMVRRAAASK-----------LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRL------------------LAVEACVNIAQLLP--QEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKDLVPAFQNLMAEVRAAASHKVKEFCLSADMSQILPCIKELVQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLK-------DECPEVRLNIISNLDCVNEVIGQLSQSLLPAIVELAEDAKWRVRLAIIYMPLLAGQLGVEFFDEKLNSLCMAWVYAIREAATSNLKKLVEKFG------KEWAHATIIPKVLAMSGDPN
7PROSPECT21jdha0.1131.0001.724threading_7LTKLLEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNEGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLALQKMVALLVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYYEKLLWTTSRVLKVLKPAIVEAGGMQALCLWTLEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVAGDREDITEPAICALRHLTSRHQEAEMAQNAVVVKLLHPPSHWPLIKATVGLIRNPANHAPLREQGAIPQFVEGVRMEEIVEGCTGALHINTIPLFVQENIQRVAAGVLCELAQDKEAAE
8PPA-I2qfcA0.0810.6631.065threading_8----------------------------------------------------------------------------------------------------------AEKLGSEIKKIRVLRENICHQSEVSRIESGAMDILQGIAAKLIIHFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNEKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDS-------------RYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI
9SPARKS2bkub0.1380.9261.062threading_9ILEPVLEFVEQNITAREAAVMAFGSIMKVQRTYYVHQA-LPSILNLMNLQVKETTAWCIGRISIDPQ-------------------QHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPYNFYPALVDGLIGAAIDNEFNARASAFSALTTMVEYATDTVAETSASISTFV-MDKLGQTMSQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEVADMLMGLFFRLLEKKEDDVFYAISALAASLKYLETF---SPYLLKALNQVDSPVSITAVGFIADISNSLEEDFMMNVLISNP-NARRELKPAVLSVFGDIASNIGADF-IPYLNDIMALCVAAQNTKPENG
10PROSPECT21b3ua0.0761.0001.717threading_10TRSELLPFLTDTIYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLVRDKAVESLRAISHEHSPSDFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLPMVRRAAASKLGEFAKVLELLLPQEDLEALVMPTLRQAWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEKDNTIEHLLPLFLAQLKDCVNEVIGIRQLSQSLLPAIVELAEDARLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKVAKSLQKIGPILDNSTLQSE

  Predicted Tertiary Structure

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TM-score=0.656 to 1ialA
SCOP code=a.118.1.1
TM-score=0.428 to 1h6gA
SCOP code=a.24.9.1
TM-score=0.589 to 1m8xA
SCOP code=a.118.1.8
TM-score=0.606 to 1oyzA
SCOP code=a.118.1.16
TM-score=0.708 to 1b3uA
SCOP code=a.118.1.2