Template-based Modeling Results for PGPB_ECOLI

Submitted Primary Sequence

>Length 254
MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPAEENREIAQREQES
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPAEENREIAQREQES
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPAEENREIAQREQES
32210220110000000000000011131212321200100000021012110000000000000000312030000000000000000100220022003222111220142221213211203321102002210233330131011112322111011100000000000000001121100000000000000000000000000100000000000000000100120013122323333312433344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPAEENREIAQREQES
1	MUSTER	1eoiA	0.184	0.728	1.134	threading_1	AFLNDQAMYEQGRLLRNTERGKLAAEDANL-----SSGGVANAFSGAFGSP-----------------ITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFY-----------------------------VSTCNTTEQDKL---SKNGSYPSGHTSIGWATALVLAEINPQR-----QNEILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHPAFQQQLQKA------KAEFAQH----
2	SPARKS	1d2ta	0.186	0.827	2.302	threading_2	-----------------------GNDTTTKPDLYYLKNSEAINSLALLPPPVGSIAFLNDQAMYEQGRLLRNTERGKLAAEDANLSSGG--VANAFSGAFGSP------ITEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRISTCNTQDKLSKNGSYPSGHTSIGWATALVLAEINPQR-----QNEILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHPAFQQQLQKA------KAEFAQHQK--
3	PROSPECT2	2a96A	0.149	0.795	1.897	threading_3	QPFHSPEESVNSQFYYDKEAYFKGYAIK-----GSPRWKQAAEDADIS---VENIARIFSPVVGAKISPKDTPETWNMLQNL--LKVGGYYATASAKKYYMRTRPFVLF-------------------------------NHSTCRPEDENTLRKDGSYPSGHTAYSTLLALVLSQARPERAQ-----ELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLIPAFQKSLAKV------REELNDKNNLL
4	PPA-I	2akcB	0.125	0.787	1.409	threading_4	SVNSQFYLDPAFRYDKEAYFKGYAIKGS---------PRWKQAAEDADISVENIARIFSPVVGAKI---SPKDTPETWNMLQNLLKVGGYYATASAKKYYMRTRPFVLFNHSTCRPE-------------------------------DENTLRKDGSYPSGHTAYSTLLALVLSQARPER-----AQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQPAFQKSLA------KVREELNDKNNLL
5	HHPRED-l	2ipb_A	0.178	0.728	5.183	threading_5	----------------MQP---FHSPEELPPGNDDPWKQAAEDADISVENIARIFSPV-------VGAKINPKDTPETWNMLQLLKMGGYYATASAKKYYMRTRPFVLF---NHST----------------------------CRPEDENTLRKDGSYPSGHDAYSTLLALVLSQARPERA-----QELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQT-IPAFQKS---LAKVREELNDKN---
6	HHPRED-g	2ipb_A	0.160	0.740	5.161	threading_6	DPAFRYDKEAYF---------------KGYAIGSPRWKQAAEDADISVENIARIFSPVV-------GAKINPKDTPETWNMLNLLKMGGYYATASAKKYYMRTRPFVLFNHSTCRPE----------------------------D---ENTLRKDGSYPSGHDAYSTLLALVLSQARPER-----AQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQT-IPAFQKSLAKVREELNDS-------
7	SP3	1d2ta	0.174	0.791	2.358	threading_7	LYYLKNSEAI--NSLALLPP-----PPAVGSIAFLNDQAMYEQGRLLRNTERGKLAAEDANLSSGGVANAEKDAPALHKLLTNMIEDAGDLATRSAKDHYMRIRPFAFYGVSTCNT---------------------------------QDKLSKNGSYPSGHTSIGWATALVLAEINPQR-----QNEILKRGYELGQSRVICGYHWQSDVDAARVVGSAVVATLHPAFQQQLQKA------KAEFAQHQK--
8	SAM-T99	2akcB	0.160	0.642	2.979	threading_8	---------RWKQAAEDADISVENIAR---------------------------IFSPVVGAKISP-----KDTPETWNMLQNLLKVGGYYATASAKKYYMRTRPFVLF--NHSTCRPED-----------------------------ENTLRKDGSYPSGHTAYSTLLALVLSQARPERA-----QELARRGWEFGQSRVICGAHWQSDVDAGRYVG------AVEFARLQTIPAFQKSLAKVR--------
9	MUSTER	2akcB	0.137	0.776	1.096	threading_9	SVNSQFYL---PAFRYDKEAYFKGY------AIKGSPRWKQAAEDADISVENIARIFSPVVGAKI----SPKDTPETWNMLQNLLKVGGYYATASAKKYYMRTRPFVLF-----------------------------HSTCRPEDENTL---RKDGSYPSGHTAYSTLLALVLSQARPER-----AQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQPAFQKSLAK-------REELNDKNNLL
10	SPARKS	2a96a	0.142	0.748	2.178	threading_10	AFRYDKEAYFKGYAIKGSPRWKQAAE-----DADISVENIARIFSPVVGAKI-----------------SPKDTPETWNMLQNLLKVGGYYATASAKKYYMRTRPFVLF-------------------------------NHSTCRPEDENTLRKDGSYPSGHTAYSTLLALVLSQARPER-----AQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQPAFQKSLAKV------REELNDKNNLL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.768 to 1eoiA SCOP code=a.111.1.1	TM-score=0.758 to 1eoiA SCOP code=a.111.1.1	TM-score=0.841 to 1eoiA SCOP code=a.111.1.1	TM-score=0.778 to 1eoiA SCOP code=a.111.1.1	TM-score=0.784 to 1eoiA SCOP code=a.111.1.1