Template-based Modeling Results for PPDA_ECOLI

Submitted Primary Sequence

>Length 156
MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL
CCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCEECCCCCCEEEEECCCCEEEECCCCCCCCCEEEEECCCCCEEEEEECCCEEEECCCCHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL
555341010100000000000000000101221231121120013012101002210221232000000222221000022222321322122010141320100201310001012211210001021321211000011010101332323214
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTASQARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEVEMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL
1	MUSTER	1oqwA	0.154	0.833	1.318	threading_1	------FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSR--------------GWSVKSGTGTE---DATKKEVPLGVAAD---ANKLGTIALKPDPADGTADTLTFTMGGAGITLTRTAADGLWKCTSDQDKGCS
2	SPARKS	2qv8a	0.155	0.744	1.033	threading_2	------------------------------------DEAKISAQSFYQRLLLLNEEAILSGQDFGVRIDVDTRRLTFLQLTADQKWQNDKTNQTTLKEGLQLDFEEPAPQLFVLS-SGEVTPFTLSIFPKGQEWRVTAQENGTLRLLAPGESD---
3	PROSPECT2	2knqA	0.127	0.808	1.006	threading_3	MAYGRE--------------------------DVANTRARETAARFTAALELAIDRATLSGQPVGIHF--SDSAWRIMVPGKTPSLQEDAADESQNDWDEELSIHLQPFKPDVILADGQITPFSLLMANAGTGLTLVCSGSWPLDQTLARDTRP--
4	PPA-I	1oqwA	0.140	0.917	2.099	threading_4	------FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKEVPLGVAADANKLGTIALKPDPADGTADITLT---FTMGGAGPKNKGKIITLTRTAADGLWKCTSDQD----EQFIPKGCS
5	HHPRED-l	1oqw_A	0.162	0.872	3.405	threading_5	------FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASV-NPLKTTVEEALSRGWSVKSGTGTDATKKEVPLGVAADANKLG-TIALKPDPADG-----TADTLTFTMGGPKNKGKIITLTRTDGLWKCT-SD-QDEQFI----PKGC-
6	HHPRED-g	1oqw_A	0.163	0.865	3.407	threading_6	------FTLIELMIVVAIIGILAAIAIPQYQNYVARSEGASALASV-NPLKTTVEEALSRGWSVKSGTGTDATKKEVPLGVAADAN--KLGTIALKPDPA-----DGTATLTFTMGGPKNKGKIITLTRTDGLWKCTSDQQFIPKGCSR-------
7	SP3	3soka	0.133	0.865	1.023	threading_7	------FTLIELMIVVAIIGILAAFAIPAYNDYIARSQAA----EGLTLADGLKVRISD--------HLESGECKGDANPASGSLGNDDKGKYALATIDGDYNKDAKTADVVITYGQGTAGEK---ISKLIVGKKLVLDQFGSYKNEGETDLEAVK
8	SAM-T99	1oqwA	0.157	0.737	1.207	threading_8	------FTLIELMIVVAIIGILAAIAIPQYQNYV-----------------------------------ARSEGASALASVNPLKTTVEEALSRGWSVKSGTGTEDATKKVPLGVAADANKLGTIALKPADGTADITLTTMGGAGPKNKGKIITLT
9	MUSTER	2hi2A	0.149	0.859	1.201	threading_9	-------TLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEG-QKSAVTEYYL-----------NHGKW---PENNTSAGVASSPTDIKGKYVKEVEVKNGVVTATMLGVNNEIKGKKLSLWAENGSVKWFCGQDDTVADAKDGKESTCR
10	SPARKS	2knqa	0.169	0.795	0.941	threading_10	--------------------------MAYGREDVANTRARETAARFTAALELAIDRATLSGQPVGIHF--SDSAWRIMVPGKTPSPLQEDAADESQNDWDEELSIHLQPFKP--DDSNQPQDGSLLMANATGEPLLTLVCSGSLDQTLARDTRP--

Predicted Tertiary Structure


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TM-score=0.690 to 1oqwA SCOP code=d.24.1.1	TM-score=0.882 to 1oqwA SCOP code=d.24.1.1	TM-score=0.463 to 1oqwA SCOP code=d.24.1.1	TM-score=0.458 to 2iecD SCOP code=d.316.1.1	TM-score=0.815 to 1oqwA SCOP code=d.24.1.1