Template-based Modeling Results for RFAG_ECOLI


  Submitted Primary Sequence

>Length 374
MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG
CEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHCCCCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHCCCHHHEEEECCCCCHHHCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG
11000002311111000100020011014220101000122323134102001010211221121020011012004322010000001000000000021020110011110112111212000001200022131110000023102100421303331010001001132211331230131014313134321000000112233102200200110042133100000023332320120044020310010000131003001000000000222000000000010100000010110121023221000002121131002001300212310210131023003212121002100200110235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMIVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGGLDG
1MUSTER2iw1A1.0000.9892.974threading_1-IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITG---G
2SPARKS3mboa0.1810.9734.568threading_2MKLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFV-YPNIYFHEVTVNQYSVFQYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIE--QSDVVTAVSHSLINETHELVKPN-KDIQTVYNFIDERVYFKRDM----TQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTEVD-AKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLC-EVGDTTGVADQAIQLLKDEELHRNMGERARESVYEFRSEKIVSQYETIYYDVLRD
3PROSPECT23c48A0.1900.9844.230threading_3MRVAMISMHTSPLQGMNVYILSTATELAKQGIEVDIYTRATRPSQGENLRVINIAAGPYEGLSKEAAFTGGMLSFTRRVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAANSYDTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGT-----ERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSDTYRHMAEELGVEKRIRFLDPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIHG
4PPA-I2iw1A1.0000.9893.850threading_4-IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG---
5HHPRED-l2iw1_A1.0000.9894.186threading_5-IVAFCLYKYFPFGGLQRDFMRIASTVAARGHHVRVYTQSWEGDCPKAFELIQVPVKSHTNHGRNAEYYAWVQNHLKEHPADRVVGFNKMPGLDVYFAADVCYAEKVAQEKGFLYRLTSRYRHYAAFERATFEQGKSTKLMMLTDKQIADFQKHYQTEPERFQILPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDKPRKFEALAEKLGVRSNVHFFSGRNDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIADANCGTVIAEPFSQEQLNEVLRKALTQSPLRMAWAENARHYADTQDLYSLPEKAADIITGG---
6HHPRED-g3c48_A0.1940.9653.078threading_6MRVAMISMHTSPL-GMNVYILSTATELAKQGIEVDIYTRATRPSVAENLRVINIAAGPYEGLSKEAAFTGGMLSFTRKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSY----DTPICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPG-----TERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGG--DTYRHMAEELGVEKRIRFLDPRSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIAN
7SP33mboa0.1810.9734.796threading_7MKLKIGITCYPSVGGSGVVGTELGKQLAERGHEIHFITSGLPFV-YPNIYFHEVTVNQYSVFQYDLALASKMAEVAQRENLDILHVHYAIPHAICAYLAIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIE--QSDVVTAVSHSLINETHELV-KPNKDIQTVYNFIDERVYFKRDM----TQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAKLLLVGDGPEFCTILQLVKNLHIEDRVLFLGKQDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIGTRVGGIPEVIQHGDTGYLC-EVGDTTGVADQAIQLLKDEELHRNMGERARESVYEFRSEKIVSQYETIYYDVLRD
8SAM-T993c4qA0.1970.9794.184threading_8MRVAMISMHTSPLGGMNVYILSTATELAKQGIEVDIYTRATRPSQGENLRVINIAAGPYEGLSKEELGGMLSFTRREKVTYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVDTP--ESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGN-DRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDNLRVIICGGP---TYRHMAEELGVEKRIRFLDPRPELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIA-
9MUSTER3c4qA0.1930.9842.581threading_9MRVAMISMHTSPLGGMNVYILSTATELAKQGIEVDIYTRATRPSQGENLRVINIAAGPYEGLSKEAAFTGGMLSFTRREKYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVDTPESEARRICEQQLVD--NADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSP-GNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGG--PTYRHMAEELGVEKRIRFLDPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIAN
10SPARKS3c48a0.1900.9844.485threading_10MRVAMISMHTSPQQGMNVYILSTATELAKQGIEVDIYTRATRPSQGENLRVINIAAGPYEGLSQLAAFTGGMLSFTRREKYDLIHSHYWLSGQVGWLLRDLWRIPLIHTAHTLAAVKNSTPESEARRICEQQLVDNADVLAVNTQEEMQDLMHHYDADPDRISVVSPGADVELYSPGT-----ERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSDTYRHMAEELGVEKRIRFLDPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIAARVGGLPIAVAEGETGLLV-DGHSPHAWADALATLLDDDETRIRMGEDAVEHARTFSWAATAAQLSSLYNDAIAN

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.994 to 2iw1A
TM-score=0.999 to native
SCOP code=c.87.1.8
TM-score=0.994 to 2iw1A
TM-score=0.999 to native
SCOP code=c.87.1.8
TM-score=0.792 to 2iw1A
TM-score=0.795 to native
SCOP code=c.87.1.8
TM-score=0.654 to 2iw1A
TM-score=0.554 to native
SCOP code=c.87.1.8
TM-score=0.994 to 2iw1A
TM-score=0.999 to native
SCOP code=c.87.1.8

  Experimental Structure

Download 2iw1A
SCOP code=c.87.1.8