Template-based Modeling Results for RFAJ_ECOLI


  Submitted Primary Sequence

>Length 338
MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCEEEECCHHHHHHCCCCCCEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCEEECCHHHEEECCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
55323223233232132322323232100000001110020000001000321331200000002212310021003003323120000202231131121231112000010000200122121000000000010000200201122000000210210111001302213111110110000000320011211220010022233213122110000002110010131000011021313331131023211320000000021211132111100200110032021333223213101201210121122221000000000110222245
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMDSFPAIEIDKVKAWDFRLANINTSECLNVAYGVDANYLDGVGVSITSIVLNNRHINLDFYIIADVYNDGFFQKIAKLAEQNQLRITLYRINTDKLQCLPCTQVWSRAMYFRLFAFQLLGLTLDRLLYLDADVVCKGDISQLLHLGLNGAVAAVVKDVEPMQEKAVSRLSDPELLGQYFNSGVVYLDLKKWADAKLTEKALSILMSKDNVYKYPDQDVMNVLLKGMTLFLPREYNTIYTIKSELKDKTHQNYKKLITESTLLIHYTGATKPWHKWAIYPSVKYYKIALENSPWKDDSPRDAKSIIEFKKRYKHLLVQHHYISGIIAGVCYLCRKYYRK
1MUSTER1ss9A0.1900.7962.205threading_1---------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDILNGLFKGGVCYANSRFNFMPTNYASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSEEWRGKL-----------------------------------------
2SPARKS1ga8a0.1870.7935.262threading_2----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPNIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGAD-GEYYFNAGVLLINLKKWRRHDIFKS-SEWVEQYKD-VQYQDQDILNGLFKGGVCYANSRFNFPTNYAFASRHTDPLYRDRTNTVPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSTVPEEWRGKL--------------------------------------
3PROSPECT21ga8a0.1970.7963.398threading_3----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGAD-GEYYFNAGVLLINLKKWRRHDIFKSSEWVEQYKD--VQYQDQDILNGLFKGGVCYANSRFNFPTNYAFASRHTDPLYRDRTNTVPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTVP-------------------------------------EEWRGK
4PPA-I1ss9A0.1860.8112.926threading_4---------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDILNGLFKGGVCYANSRFNFMPTANASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAERFTELAGSLTTVPEEWRGKL------------------------------------
5HHPRED-l3tzt_A0.2350.6547.847threading_5--------------------------ADALLLTLDENYIPQ-KVL-TSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-------------PKE-YYRLLAGEFLPENLGEILYLDPD-LVINPLDDLLRTDISDYILAAASH--------------------YYNSGLLLINLKRAREEIDPDEIFSFVEDN--------QDILNA-YGDRIYPLDDIYNYDARNYSSIRSK-KQADLAWL-DHTVVLHFCGRDKPWKKNHRNKFTSLYKHY-SLTKRY------LA------------------------------------
6HHPRED-g3tzt_A0.2310.6546.929threading_6--------------------------ADALLLTLDENYIPQ-KVL-TSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRAT-------------PKE-YYRLLAGEFLPENLGEILYLDPD-LVINPLDDLLRTDISDYILAAASH--------------------YYNSGLLLINLKRAREEIDPDEIFSFVEDN--------QDILNA-YGDRIYPLDDIYNYDARNYSLIRSKKQ-ADLAWL-DHTVVLHFCGRDKPWKKNHRNKFTSLYKHY-SLTKRYLA------------------------------------------
7SP31ga8a0.1870.7934.980threading_7----------------------------DIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPNIRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGADG-EYYFNAGVLLINLKKWRRHDIFKS-SEWVEQYKD-VQYQDQDILNGLFKGGVCYANSRFNFPTNYAFASRHTDPLYRDRTNTVPVAVSHYCGPAKPWHRDCTAWGAERFTELAGTTVPEEWRGKL--------------------------------------
8SAM-T991ss9A0.1950.7578.340threading_8---------------------------MDIVFAADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNPEDFAGFPLNRHISITTYARLKLGEYIA-DCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGACIDLFVERQEGYKQKIGMADGEYYFNAGVLLINLKKWRRHDIFKMSCEWVEQYKDVMQYQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANASR--HTDPLYRDVAVSHYCGPAKPWHRDCTAWGAERFTE----------------------------------------------------
9MUSTER3tztA0.2190.6631.611threading_9--------------------------ADALLLTLDENYIPQ--KVLTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRA--------------TPKEYYRLLAGEFLPENLGEILYLDPDLVI-NPLDDLLRTDISDYILAAA--------------------SHYYNSGLLLINLKRAREEIDPDEIFSFVED--------NQDILNAYGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYSLTKRYLA-------------------------------------------
10SPARKS3tzta0.2190.6634.217threading_10--------------------------ADALLLTLDENYIP--QKVLTSIYINNPGRIFDVYLIHSRISEDKLKDLGEDLKKFSYTLYPIRA--------------TPKEYYRLLAGEFLPENLGEILYLDPDLVI-NPLDDLLRTDISDYILAAASH--------------------YYNSGLLLINLKRAREEIDPDEIFSFVED--------NQDILNAYGDRIYPLDDLIYNYDARNYSSYLIRSKKQADLAWLDHTVVLHFCGRDKPWKKNHRNKFTSLYKHYSLTKRYLA-------------------------------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.869 to 1ss9A
SCOP code=c.68.1.4
TM-score=0.870 to 1ss9A
SCOP code=c.68.1.4
TM-score=0.877 to 1ss9A
SCOP code=c.68.1.4
TM-score=0.879 to 1ss9A
SCOP code=c.68.1.4
TM-score=0.891 to 1ss9A
SCOP code=c.68.1.4