Template-based Modeling Results for RFAY_ECOLI


  Submitted Primary Sequence

>Length 232
MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR
CCCEEEECCEEEEEECCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEEEEEEEECCEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHHHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR
5432121241100022322201200220133211102003314312000010221200021212213211200211131321120021022023221301220100022212311210000010032231221220132013201200210041000001023100002211010000213312212201100001322213222310000000012102200431333334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMIQKSKIKDLVVFTDENNSKYLNVLNDFLSYNINIIKVFRSIDDTKVMLIDTDYGKLILKVFSPKVKRNERFFKSLLKGDYYERLFEQTQKVRNEGLNTLNDFYLLAERKTLRFVHTYIMIIEYIDGIELCDMPDIDDALKNKIQQSINALHQHGMVSGDPHRGNFIIKNGEVRIIDLSGKRASAQRKAKDRIDLERHYGIKNEIRDLGYYLLVYRKKMRNFMRRLKGKPAR
1MUSTER3en9A20.1890.7761.488threading_1------------------------------------------AEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDLDN--------KRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFD-KDLYIIDFGLISNLDEDKAVDLIVFKKAVEKFDEIWERFLEGYKSVDRWEIILELMKDVERR
2SPARKS2vwba0.1580.9572.075threading_2RWMSLDETKIIPNYRTDMVEVNWIKEIKGKKRKIPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDLD--------NKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIF-DKDLYIIDFGLISNLDEDKAVDLIVFKKAVSTHHEKFDEIWERFLEGYKWEIILELMKDVERR
3PROSPECT23i0oA0.1480.8751.322threading_3Q-------------PIQAQQLIELLKVHYGIDIHTAQFIQGGADAFAYQADSESKSYFIK---------------LKYGYHDEINLSIIRLLHDSGIKEIIFPIHTLEAKLFQQLKFKIIAYPFIHAPNGFT-QNLTGKQWKQLGKVLRQIHETSLCHSDIHAGNVLVGNEEIYIIDGGGVGNVWNKPHEIQYFYEGYGEINVDKTILSYYRHERIVEDLESFKYFKEMFDP
4PPA-I3en9A20.1780.7763.204threading_4------------------------------------------AEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDL--------DNKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDKD-LYIIDFGLISNLDEDKAVDLIVFKKAVLSTHHEKRFLEGYKSVYDRWEIILELMKDVERR
5HHPRED-l2acx_A0.1480.9311.321threading_5RLEQGPCKDLAPFADYLDSIYFNLRQPVTKNTFRQYRVLGKGGFGEVCACQVRGKMYACKKLEKKRIKKRKGE------AMALNEK--------QILEKVNSRFVVSLAYAYETKDALCLVLTLMNGGDLKFHEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDHGHIRISDLGLAVHTVGYMAPEVVK-NERYTFSPDWWALGYEMIAGQSPFQQRKEEVELVKE-
6HHPRED-g3pvu_A0.1360.8531.699threading_6EILRGDVFQKFIESDKFTIGRGGFGEVYGTGKMYAMKCLDK-----------------------------KRIKMKQGETLALNERIMLSLVSTG-----DCPFIVCMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGFYAAEIILGLEHMHNRFVVYRDLKPANILLDHGHVRISDLGLACDFSKKKPHASMEVLQAYDSSADWFSLGCMLFKLLGHFLDVNRRLGCLGRG
7SP32vwba0.1670.9571.951threading_7MIRWMSLDETKIIPNYRTDMVEVNWEIKGKKRKIPEHLIGKGAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDLD--------NKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIF-DKDLYIIDFGLISNLDEDKAVDLIVFKKAVSTHHEKFDEIWERFLEGYKWEIILELMKDVERR
8SAM-T993f69B0.1980.8061.445threading_8-------------------------------RYELGEILGFGGMSEVHLARDDHRDVAVKVLRADLARDPSFYLR------FRREAQNAAAL--------NHPAIVAVYDTGEAETPAYIVMEYVDGVTLRDIPKRAIEVIADACQALNFSHQNGIIHRDVKPANILIATNAVKVVDFGIARAIADIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV
9MUSTER1zaoA0.1700.8621.144threading_9VVQNRQ-KDYEGSTFTFIGLSLYSLHRLVRSGDAIGKLMGEGKESAVFNCYSKFGECVVKFHKVGHTKVKEFSVLAIR--SARNEFRALQKLQGLAV-----PKVYAWEGN-------AVLMELIDAKELYRVRENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEEGIWIIDFPQSVELERDVRNIITYFSRTYRTEKD--------------INSAIDRILQE---
10SPARKS3en9a0.1800.9571.896threading_10MLKAMEGQNVDFYVPPKEWLGLLMHKNGRWMSLDETKIIPNIAEADIKRDSYLDFDVIIKERVKKGYRDERLDENIRKS-RTAREARYLALVKDFGIPAPYIFDVDLD--------NKRIMMSYINGKLAKDVIEDNLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIF-DKDLYIIDFGLGKISDEDKAVDLIVFKKAVSTHHEKDEIWERFLEGYKSWEIILELMKDVERR

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.549 to 1nd4A
SCOP code=d.144.1.6
TM-score=0.549 to 1nd4A
SCOP code=d.144.1.6
TM-score=0.565 to 1nd4A
SCOP code=d.144.1.6
TM-score=0.567 to 1zylA
SCOP code=d.144.1.6
TM-score=0.555 to 1nd4A
SCOP code=d.144.1.6