Template-based Modeling Results for RNFD_ECOLI


  Submitted Primary Sequence

>Length 352
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
CEEEECCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
2102101012021332002000000000000000100000000000000000001001000120242212211421100000000000011201110000000000000120110002110000000000000000011121111131222120011001000112112102120021001011300001003121322111210100101111010001100000000000000122002010000000000000000110113211000000000000000000001211012133010000000000000020010111000000000000000012102232223445
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTLVQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGTVFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQVIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGAGWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCAMLGWLFSPETLAAPQIHLLSGATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANITVPLIDYYTRPRVYGHRKG
1PROSPECT21xm9A0.0880.9631.644threading_1VQYLSSQDEKYQDESAKQQVYQLGGICKLVDLLQNVQQAAAGALRNLVLETRRQNGIREAVSLLRRTG------NAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLR---NLSSADAGRQTMRNYSGLIDSLNCVAASRCDDKSVENCMCVLHNLSYRPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGATLEACAGALQNLTASKGLMSSGMSQLIGGLPQIARLLQSGNSDVVRSGASLLSNMSFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM----ASQPQLAKQYFSSSMLNNIINLCRSSASMWSSKE
2HHPRED-g3gia_A0.1230.9011.018threading_2--LK-------NKKLSLWEAVSMAVGVMIGASFVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVSKAIGDNITGALSILLWMSINAPNTFNIAITEIGIVAFFGSKAVGRA-EFFIVLVKLLILGLFAGLITHPSYVIPD-LAPSAVSGMIFASAIFFLSY--MGF--GVITNASEHAIGNLPIDELIKAS-------ENALAVAAK-PFLGNLGFLISIGALFGGANVAYERKVWFKSTEGLYITSALGVLFAL-LF---NMEGVASITSAVFMLSHYILID------EVGGRKEI--VIFSFIVVLGVFLLLYRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNN
3PROSPECT21ejlI0.0770.9551.592threading_3VKGINSNNLESQKQPPIDNIIRAGLIPKFVSFLSPIQFESAWALTNITKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN---LCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPS-LLTNPKTNIQKEATWTMSNI-----TAGRQDQIQQVVNHGLVPFLVGVLSKADFTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILISNIFQAALDKIEALQRHENESS
4PROSPECT23a6pA10.1000.9351.587threading_4VTVMMDPNSTQRYRLEALKFCEEFCVPCGLRLAAIVRHFGLQILEHVVKFLEKVYLKNSVMELIANGTLNILEEENHSRIVVEMIKREWPQHWPETQTELVMFILLRLAEDVVTFQTLPPIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITA------ENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHY-----------------ILSAAQTADGGGLVEKHYVFLKRLCQVLCALLLGADSDVETPSNFGKYLRSSTQMTWGALFRHEILSRDPLLLAIIYLRASMTNLVKMGFPSKTDSPTF
5PROSPECT21jdha0.1150.9861.583threading_5AVTKLLNDEDSKKEASRHAIMPQMVSAIVRTMQNSVLFYAITTLHNLLLAVRLAGGLQKMVALLNKTNVKFLAITTDCLGPQALVNIMRTYTYEKLLWTTSRVLKVLGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHP---PSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHLFVQLLYSPIENIQRVAALCELATAPLTELLHSRNEGVATS
6PROSPECT21ee4a0.0850.9401.535threading_6QELSREHRPPIDRENQPEMLQLEAAWALTSAQTKVVVDADAKEQAIWALGNVAGDSTDYRDYVLQCNAFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL-------IYSMDTETLVDACWAIS---YLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQR---PDIIRYLVSQGCIKPLCDLLEIAD--------NRIIEVTLDALENILKMGGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKA
7MUSTER3zuxA0.1280.8180.805threading_7ILSKI-----------SSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQF-------AIMPATAWCLSKLL------------LPAEIAVGVILVGCCP---------------GGTASNVMTYLARGNVA----LSVAVTSVSTLTSLTPAIFLMLAGEM----LEIQAAGMLM-----SIVKMVLLPIVLGLIVHKVLGLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAALPYDAQKALTIEVGSGLAAALAAAHAAAPVPGALFSVWHNISGSLLATYW------AAKA
8SPARKS3m1ic0.1130.9260.893threading_8LVYLTHLNV-----IDTEEIMISKLARQISWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVV--GQYPRFLKAHWNFLRTVILKLFEF-MHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTAD-LQPQQVHTFYKACGSEERSVAERNRLLSDLMQLPNMAWDTIVEQSPTLLLDSETVKIIANIIKTNVA--------VCTSMGADFYPQLGHIY------YNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVVLVEPLLNAVLEDY-MNNVPDARDA
9PROSPECT21gw5b0.0970.9941.460threading_9SKYFTTNKKELNNEKKEKRKEAVKKVIAASSLFPDVVNLELKKLVYLYLMNYAKSQPDMAIMAVN--SFVKDCEDPNPLIRALVRTMGCIRVDKITEYLCEPKTAAVCVAKLHDINAQMVEDQGFLDSLRNAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVIMIRLASQANIAQVLAELFVRKAVRAIGRCAIKVYPNKYESIIATLCENARAAMIWIVGEYAERIDNADELLQVQLTLLTAIVKLFLKKPSETQEV
10PPA-I2vpyC0.1450.6880.954threading_10--AEFYGLPNAQEFWHWTNALHFVLVGLAGGVALLAALLHLKAEARRYTLYALMLIALDLFILWAESPARFRFTHIWLF-------LSFHPTSPIWWGAWGLGLGFLTGGLLYLGKGSQALAWALLVFSLVALSYPGLALAVNLNRPLWNGLMAGLFPLTALVLALLKSPWALFPLRVL----AGASLLLALLYPLTLPPEARGHLLEEA---------GFWYGLFLLLGLGTFWQERLAPW---AGLLAAAGLRALLVLAGQWQGL-------------------------------------------------------------------------------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.415 to 1h6gA
SCOP code=a.24.9.1
TM-score=0.819 to 1xm9A
SCOP code=a.118.1.24
TM-score=0.602 to 2q6hA
SCOP code=f.54.1.1
TM-score=0.774 to 1t5jA
SCOP code=a.209.1.1
TM-score=0.770 to 1ialA
SCOP code=a.118.1.1