Template-based Modeling Results for RNT_ECOLI


  Submitted Primary Sequence

>Length 215
MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV
CCCCCCCCCHHHHCCCCEEEEEEEECCCCCCCCCCEEEEEEEEEEECCCCCEECCCEEEEEEECCCCCCCCHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV
55332322211221211000000010021224211001000000212432211231100000102221302330020110112221321121230023003101300211103300000000200010001003303133231220000000000022023110120031020313222000001001000100020021035121222221333
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLSAAEEV
1MUSTER2f96A0.6020.9123.537threading_1-------RHPARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGD-EKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLD-HPLRAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKEGGW---------
2SPARKS2f96a0.6120.9124.500threading_2-------RHPARRFRGYLPVVVDVETGGFNSATDALLEIAATTVG-DEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKL-DHPLRAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKEGGW---------
3PROSPECT22is3A0.8630.9163.766threading_3L------TGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLKDEQGWL--PDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKA-SGCNRAIVAHNANFDHSFAAAERASLKRN--PFHPFATFDTAALAGLALGQTVLSKACQTAGDF-DSTQAHSALYDTERTAVLFCEIVNRWKRLGGWP------L
4PPA-I2f96A0.6070.9125.586threading_4-------RHPARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGD-EKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKL-DHPLRAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKEGGW---------
5HHPRED-l2f96_A0.6280.9124.577threading_5------RHP-ARRFRGYLPVVVDVETGGFNSATDALLEIAATTVG-DEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLR-AVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKE-GGW--------
6HHPRED-g2f96_A0.6280.9124.687threading_6------RHP-ARRFRGYLPVVVDVETGGFNSATDALLEIAATTVG-DEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLR-AVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKE-GGW--------
7SP32f96a0.6070.9124.533threading_7-------RHPARRFRGYLPVVVDVETGGFNSATDALLEIAATTVGD-EKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKL-DHPLRAVQEEAALTEIFRGIRKALKANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQAAG-EFDNREAHSARYDTEKTAELFCGIVNRWKEGGW---------
8SAM-T992p1jB0.2600.7865.511threading_8-----------------TFVVLDFETTGLDPQVDEIIEIGAVKIQGGQ-----IVDEYHTLIKP--SREISRKSSEITGIT---------QEMLENKRSIEEVLPEFLG-FLEDSIIVAHNANFDYRFLRLWIKKVMG---LDWERPYIDTLALAKSLLKSYSLDSVVEKLGLGPFR--HHRALDDARVTAQVFLRFVEMMKKEGHHH-------
9MUSTER2is3A0.9540.9163.467threading_9------LTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITLK-DEQGWL-PDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKVVRKGIKASGCN-RAIVAHNANFDHSFAAAERAS--LKRNPFHPFATFDTAALAGLALGQTVLSKACQTAG-DFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPL------
10SPARKS1j53a0.2350.7723.799threading_10-----------------RQIVLDTETTGMNQEGHKIIEIGAVEVVNRR----LTGNNFHVYLKP--DRLVDPEAFGVHGIAD-EFLLDKPTFAEVADEFMDYI---------RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCVTDSLAVARKMFPRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTG----------------

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.949 to 2f96A
TM-score=0.928 to native
SCOP code=c.55.3.5
TM-score=0.952 to 2f96A
TM-score=0.926 to native
SCOP code=c.55.3.5
TM-score=0.952 to 2f96A
TM-score=0.934 to native
SCOP code=c.55.3.5
TM-score=0.873 to 2f96A
TM-score=0.902 to native
SCOP code=c.55.3.5
TM-score=0.950 to 2f96A
TM-score=0.923 to native
SCOP code=c.55.3.5

  Experimental Structure

Download 3nh1A
SCOP code=c.55.3.5