Template-based Modeling Results for SSPB_ECOLI

Submitted Primary Sequence

>Length 165
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPALRVVK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPALRVVK
CCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHCCCCEEEEECCCCCCCCEEEECCEEEEEEEECCEEEEEEEEHHHHEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPALRVVK
553342222201001000100031400000000021320301231133010000002200110101211010201112101100000000000013321200102132223332222333322233322222232333333332333332343343332212114
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPALRVVK
1	MUSTER	1yfnA	1.000	0.661	3.294	threading_1	--LSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYD------------------------------------------------------
2	SPARKS	1ox8a	1.000	0.636	3.928	threading_2	----QLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVP-EYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT-FEPEAAYD------------------------------------------------------
3	PROSPECT2	1ou8A	0.623	0.642	2.526	threading_3	S-----SPKRPYLLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRELYIPMGAALAIYARENGDGVMFEPEEIYD------------------------------------------------------
4	PPA-I	1yfnA	1.000	0.661	5.489	threading_4	--LSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYD------------------------------------------------------
5	HHPRED-l	1yfn_A	1.000	0.661	7.187	threading_5	--LSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYD------------------------------------------------------
6	HHPRED-g	1yfn_A	1.000	0.661	6.383	threading_6	--LSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYD------------------------------------------------------
7	SP3	1ox8a	1.000	0.636	3.591	threading_7	----QLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVP-EYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT-FEPEAAYD------------------------------------------------------
8	SAM-T99	1yfnA	1.000	0.661	7.591	threading_8	--LSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPMEYARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGTMFEPEAAYD------------------------------------------------------
9	MUSTER	1oulA	0.538	0.721	3.139	threading_9	--EYKSSPKRPYLLRAYYDWLVDNSFTPYLVVDATYLGVNVPVEYVKDGQIVLNLSASATGNLQLTNDFIQFNARFKGVSRELYIPG-AALAIYARENGDGVFEPEE-IYDELNIEPDTEQPT------------------------------------------
10	SPARKS	2qasa	0.229	0.636	1.562	threading_10	EDLMQAQDALRGVVKAALKKAAAPGGLPYITFKTKAAGVSGPSKYPDEMTIVL---QHQYWDLAPGETFFSVTLKFGGQPKRLSVPYAALTRFYDPSVQFALQFSAPE---------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.826 to 1yfnA TM-score=0.994 to native SCOP code=b.136.1.1	TM-score=0.826 to 1yfnA TM-score=0.994 to native SCOP code=b.136.1.1	TM-score=0.787 to 1yfnA TM-score=0.944 to native SCOP code=b.136.1.1	TM-score=0.798 to 1yfnA TM-score=0.958 to native SCOP code=b.136.1.1	TM-score=0.826 to 1yfnA TM-score=0.994 to native SCOP code=b.136.1.1

Experimental Structure

Download 1yfnA

SCOP code=b.136.1.1