Template-based Modeling Results for TQSA_ECOLI

Submitted Primary Sequence

>Length 344
MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLLSDLNKE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLLSDLNKE
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCEEEEECCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLLSDLNKE
55332222301200000000000000020003000000000000000100021034241231100000000111011111211011032014101301400120021012003302130123101310113001100120011002000000000000000002122111102211232230120022002101200001000000000000000000203100000000000210110000000000001001121111000000000000101010010201131110011000001000020010000000000000020001212201000111233479
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIAVILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIMTPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLFMLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAALDVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFGNILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSIAVLLSDLNKE
1	SPARKS	2xwub	0.115	0.985	1.106	threading_1	ISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVMETSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGSSLTLTFWYTLQDDILEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGF-WSFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSYSWQHTEALLTIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLAANIVAVSQDVLMKQIHKTSQC-MWL-MQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLSNLFTTLDIS
2	PROSPECT2	1ejlI	0.137	0.997	1.774	threading_2	GTVNGINSNNLESQLQATQAARKLLLIPKFVSFLIQFESAWALTNIASPAFISLLASPHAHISEQAVWALGNIASAFRDLVIKHGAIDPLLALLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQI-LPTLVRLLPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSTKIIQVILDAISNIFQAAETEKLSIMIEECGGLDKIEALQRHENES
3	PPA-I	3g61A1	0.079	0.922	1.401	threading_3	YAG--------WLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFF----GGFIIGFTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNGWQLTLLLLAIVPII-----AIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFG----------AYLVTQQLMT
4	PROSPECT2	1jdha	0.125	1.000	1.729	threading_4	AVVNLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMPQMVSAIVRTMQNTTAGTLHNLSHHREGLLAIFKSGGIPALVSVLFYAITTLHNLLLHQEGAKMAVRLALQKMVALLNKTNVKFLAIILAYGNQESKLIILASGGPQALVNIMRTLLWTTSRVLKVLSVCSSNKPAIVEAGDPSQRLVQNCLWTLRNLVVTCAAGILSNLTGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIEN
5	PPA-I	3zuxA	0.098	0.860	1.264	threading_5	-----------NILSKISSFIGKTFSLWAALFAAAAFFIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN--------LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVV--LHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQ----NSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA-----------------------
6	PROSPECT2	1ee4a	0.110	0.980	1.715	threading_6	PIDVVIQAGVVPRLVLQLEAAWALTNIAQTKVVVDADAVPLFIQLLYTGSVEVKEQ------AIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQA-LPTLAKLITETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADCQQNENDK
7	PPA-I	1t33A	0.089	0.622	1.079	threading_7	---------------------------------------------------------------------------------------------MTKGEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQN--IAAITYYFGSKEDLYLACAQWIADFLGEKF--RPHAEKAERLFSQPAPDRDAIRELILLACKNMIMLLTQEDTVNLSKFISREQLSPT-SAYQLVHEQVID------PLHTHLTRLVAAYTGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGLTQ--------------------------
8	PROSPECT2	3a6pA1	0.125	0.956	1.609	threading_8	AGTLNILEEENHIKDALSRIVVEMIKRELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVAQANCRVGVAALNTLAGYIDWVSMSHITAENCK------LLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTAKHYVFLKRLCQVLCALGNQLCALLGADSDVNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHLLLAIIPKYLRASMTNLVKMGFPSEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGE---------WLKYQLSTF
9	PPA-I	2yl4A1	0.095	0.610	1.027	threading_9	---------------GLPEARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVNRLRTSLFSSILRQ------EVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQAS----VGISMMFFV-SPNLATFVLSVTVGELSSFLMYAFWVGISIGGLSSFYSELMK--GLGAGGRLWELLEREPK----------------------------------------------------------------------------------------------------------
10	PROSPECT2	1gw5a	0.115	0.936	1.555	threading_10	GDKALDGYSKKKYVCKLLFIFIGYLFISVLIRLINNAIKNDLAEAFAGEIPKILVAGDTMDSVKQSAALCLLTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTKLLRLLQCYPPPEDPAV------RGRLTECLETILNKHSNAKNAVLFEAISLIIHHDSEPNLLVRLGQFLQHRETNLRYL--ALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDT----ILNLIRIAGDYVSEEVWYRVIQIVIDVQGYAAKTVFE----------ALQAPACH

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.425 to 1pd3A SCOP code=a.30.3.1	TM-score=0.617 to 1qgkA SCOP code=a.118.1.1	TM-score=0.867 to 1ialA SCOP code=a.118.1.1	TM-score=0.423 to 1h6gA SCOP code=a.24.9.1	TM-score=0.415 to 1ysmA SCOP code=a.2.16.1