Template-based Modeling Results for YADK_ECOLI


  Submitted Primary Sequence

>Length 198
MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCEEEECCCCCEEECCEEEHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEECCCCCCCCCCHHHEECCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCEEEEEEEEEEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE
443212310210000000000000011122201010101211020112331101001000110222122322233122010100102231324211101010212212212213200112222202100000012332222110131222221001011331220102000000111212212202010201020223
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMHPTQRKLMKRIILFLSLLFCIACPAIAGQDIDLVANVKNSTCKSGISNQGNIDLGVVGVGYFSGNVTPESYQPGGKEFTITVSDCALQGTGDVLNQLHIDFRALSGVMAAGSRQIFANEISSGASNVGVVIFSTQDSANTFNVLNASGGSRSVYPVMSDDMNGSSWKFSTRMQKIDPALSVTSGQLMSHVLVDIYYE
1MUSTER2jmrA0.1830.7731.776threading_1--------------------------MADSTITIRGYVRDNGCSVAAESNFTVDLMENAAKQFNNIGAT----TPVVPFRILLSPCGNAVSA-----VKVGFT---GVADSHNANLLALETVSAASGLGIQLLNEQQNQIPLNAPSSALSWT-----TLTPGKPNTLNFYARLMAT--QVPVTAGHINATATFTLEYQ
2SPARKS3jwne0.1570.7733.538threading_2---------------------------ADSTITIRGYVRDNGCSVAAESNFTVDLMENAAKQFNNIGAT----TPVVPFRILLSPCGNAVS-----AVKVGFTGVADSHNANLLAL--ENTVSAAAGLGIQLLNEQQNQIPLNAPSSALS-----WTTLTPGKPNTLNFYARLMATQV--PVTAGHINATATFTLEYQ
3PROSPECT22uy6B0.1220.7471.773threading_3------------------------------KVTFNNTVVDAPCSISQSADQSIDFGQLSKSFLEAGGV-----SKPMDLDIELVNCDITAFKGGKGTVKLAFT---GPIVNGHSDELD---TNGGTGLAIVVQGAGKNVVFDGSEGDANTL---------KDGENVLHYTAVVKKSSAVAAVTEGAFSAVANFNLTYQ
4PPA-I2j2zB0.1300.7372.605threading_4------------------------------RAAFHGEVVRPACTLAMEDWQIIDMGETPVRDLQNGF-----SGPERKFSLRLRNCEFNSQGFSDSRIRVTFDGVRGETPDK------FNLSGQAKGINLQIADVRGNIARAGKVMPA---------IPLTGNEEALDYTLRIVRNG--KKLEAGNYFAVLGFRVDYE
5HHPRED-l2uy6_B0.1100.7323.996threading_5------------------------------KVTFNNTVVDAPCSISQKADQSIDFGQLSKSFLEAGGV-----SKPMDLDIELVNCDITAFK--KGTVKLAFTGPIVNG---HSDELDTN--GGTGL-AIVV-QGAGKNVVFDGSEGD--------ANTLKDGENVLHYTAVVKKSSVGAAVTEGAFSAVANFNLTY-
6HHPRED-g2uy6_B0.1160.7373.950threading_6------------------------------KVTFNNTVVDAPCSISQKSDQSIDFGQLSKSFLEAGGV-----SKPMDLDIELVNCDITAFK--KGTVKLAFTGPIVN---GHSDELDTN--GGTGL-AIVV-QGAGKNVVFDGSEGD--------ANTLKDGENVLHYTAVVKKSSVGAAVTEGAFSAVANFNLTYQ
7SP33jwne0.1840.7683.399threading_7---------------------------ADSTITIRGYVRDNGCSVAAESNFTVDLMENAAKQFNNIG----ATTPVVPFRILLSPCGNAVS-----AVKVGFT---GVADSHNANLLALENVSAAAGLGIQLLNEQQNQIPLN-----APSSALSWTTLTPGKPNTLNFYARLMAT--QVPVTAGHINATATFTLEYQ
8SAM-T992jmrA0.1840.7683.944threading_8--------------------------MADSTITIRGYVRDNGCSVAAESNFTVDLMENAAKQFNNIGATTPV----VPFRILLSPCGNAVSA---VKVGFTGV-----ADSHNANLLALENVSAASGLGIQLLNEQQNQ---IPLNAPSSALSWTTLTPGK--PNTLNFYARLMATQV--PVTAGHINATATFTLEY-
9MUSTER2jtyA0.1840.7981.743threading_9----------------------AATTVNGGTVHFKGEVVNAACAVDAGSDQTVQLGQVRTASLAQEGAT----SSAVGFNIQLNDCDTN----VASKAAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDRTGAALTL-----DGATFSSETTLNN--GTNTIPFQARYFATGA---ATPGAANADATFKVQYQ
10SPARKS2jtya0.1710.7983.272threading_10----------------------AATTVNGGTVHFKGEVVNAACAVDAGVDQTVQLGQVRTASLAQEGAT----SSAVGFNIQLNDCDTNVAS----KAAVAFLGTAIDAGHTNVLALQSSAAGSATNVGVQILDRTGAALTLDGATFSSE-------TTLNNGTNTIPFQARYFATG---AATPGAANADATFKVQYQ

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.670 to 1pdkB
SCOP code=b.2.3.2
TM-score=0.664 to 1pdkB
SCOP code=b.2.3.2
TM-score=0.656 to 1klfP
SCOP code=b.2.3.2
TM-score=0.771 to 2uy7B
SCOP code=b.2.3.2
TM-score=0.788 to 2j2zB
SCOP code=b.2.3.2