Template-based Modeling Results for YAHA_ECOLI

Submitted Primary Sequence

>Length 362
MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQKKQLFEKLGIQSDITFWRDIFFQYNPEIISATGSNSHRYINDNHYHHIVTPEAISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKAGG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQKKQLFEKLGIQSDITFWRDIFFQYNPEIISATGSNSHRYINDNHYHHIVTPEAISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKAGG
CCCCEEEEECCHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHCCCCHHHHHHHHHHHHCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCCEEECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQKKQLFEKLGIQSDITFWRDIFFQYNPEIISATGSNSHRYINDNHYHHIVTPEAISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKAGG
54421010002211112312122002211210120022012222110010000000013433103200100010102211132113102322120010013101110100310130044211100010000042110000100010201220200021000002200100200200022001201202431233010000000111232101320130043121222101010012002211220220021035120100000101000002002201221010120002201224200100100020035010100021121331021022220320100000210203200121123235
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNSCDFRVFLQEFGTTVHLSLPGSVSEKERLLLKLLMQGMSVTEISQYRNRSAKTISHQKKQLFEKLGIQSDITFWRDIFFQYNPEIISATGSNSHRYINDNHYHHIVTPEAISLALENHEFKPWIQPVFCAQTGVLTGCEVLVRWEHPQTGIIPPDQFIPLAESSGLIVIMTRQLMKQTADILMPVKHLLPDNFHIGINVSAGCFLAAGFEKECLNLVNKLGNDKIKLVLELTERNPIPVTPEARAIFDSLHQHNITFALDDFGTGYATYRYLQAFPVDFIKIDKSFVQMASVDEISGHIVDNIVELARKPGLSIVAEGVETQEQADLMIGKGVHFLQGYLYSPPVPGNKFISEWVMKAGG
1	MUSTER	3ii8B	0.319	0.702	2.807	threading_1	-------------------------------------------------------------------------------------------------------HERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLVT--DEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGN-LSTPQAADAFASLLDRQKAS
2	PROSPECT2	3pjwA	0.176	0.895	4.577	threading_2	IRGGEFAVLAPGMTR------EEALQLAQSLDSALSSLYATGATDVAAVASIGLAPFA-HGDSPQAVLSLGDQALAQ----------AEGQGEQNWACLDGDD--HHAWHRLLDQALNQRRFELFFQPVVAAQDTQVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH------EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQ-AVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKP------------WG
3	SPARKS	3n3ta	0.320	0.699	5.479	threading_3	--------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLVT--DEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGN-LSTPQAADAFASLLDRQKAS
4	HHPRED-l	3pjx_A	0.177	0.906	5.327	threading_4	TQNLVTRIRGGEFAVLAPGMTREEALQLAQSLDSALSSLYATGATDVAAVASIGLAPFAHGDSPQAVLSLGDQALAQ----------AEGQGEQNWACLD-----HHAWHRLLDQALNQRRFELFFQPVVAAQDQLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGHE------ESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQ-AVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG------------
5	PPA-I	3ii8B	0.319	0.702	5.988	threading_5	-------------------------------------------------------------------------------------------------------HERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLVT--DEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGN-LSTPQAADAFASLLDRQKAS
6	HHPRED-g	3hvb_A	0.202	0.685	4.778	threading_6	---------------------------------------------------------------------------------------------------------RGDVIAILQQALETNSFRLLFQPVISLRGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKGH-QTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQV-ENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS-------
7	PROSPECT2	3gfxA	0.195	0.909	4.252	threading_7	MNGLQFFQVLEGT-----------EEALESLFSEIQSDPRHRDVVELMRDYLDLRLFETDG-ALEEILRFSTFRLLS----------AFIADGGRYCLPEPLQPSRMMPATAAPQHLPGQPCQFALQAIVEPAKKRVSSFEALIRS--PTGG-SPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPL-----GKHQLAINLLPGSYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPV---A
8	SP3	3n3ta	0.316	0.699	5.655	threading_8	--------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRADLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLVT--DEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGN-LSTPQAADAFASLLDRQKAS
9	HHPRED-g	3pjx_A	0.174	0.887	4.653	threading_9	IRGGEFAVLAPGMT------REEALQLAQSLDSALSSLYATGATDVAAVASIGLAPFA-HGDSPQAVLSLGDQALAQ----------AEGQGEQNWACLD-----HHAWHRLLDQALNQRRFELFFQPVVAAQDQLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGHEE------SLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQ-AVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG------------
10	SAM-T99	3ii8B	0.325	0.696	6.917	threading_10	---------------------------------------------------------------------------------------------------------RLTLDTRLRQALERNELVLHYQPIVELASGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRADLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLV--TDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGNL-STPQAADAFASLLDRQKAS

Predicted Tertiary Structure


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TM-score=0.687 to 2basA SCOP code=c.1.33.1	TM-score=0.657 to 2basA SCOP code=c.1.33.1	TM-score=0.663 to 2basA SCOP code=c.1.33.1	TM-score=0.686 to 2basA SCOP code=c.1.33.1	TM-score=0.663 to 2basA SCOP code=c.1.33.1