Template-based Modeling Results for YBAK_ECOLI

Submitted Primary Sequence

>Length 159
MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD
CCHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHHEEEEEEEEECCCCCEEEEEEEECCCEECHHHHHHHHCCCEEECCCHHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHCCCEEEEECCCCCCEEEECHHHHHHHHCCEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD
423012102424020100203123231310120043120323100100000023423100000011112011320031121220210312102301202110001112333020000010221110000013320101000210130030210100355
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD
1	MUSTER	2dxaA	0.968	0.969	3.816	threading_1	-TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDKH-LAVAVTPVAGQLDLKKVAKALGAKKVEADP--VAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARR-
2	SPARKS	1dbxa	0.587	0.943	4.596	threading_2	-TPAIDLLKKQKIPFILHTYDHDPGD-----EAAEKLGIDPNRSFKTLLVAENGDQK-KLACFVLATANLNLKKAAKSIGVKKV-EADKDAAQKSTGYLVGGISPLGQKKRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGAEFTDIVDE-
3	PROSPECT2	2dxaA	0.968	0.969	3.111	threading_3	-TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDKH-LAVAVTPVAGQLDLKKVAKALGAKKVEADP--VAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARR-
4	PPA-I	2dxaA	0.968	0.969	4.647	threading_4	-TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGDKH-LAVAVTPVAGQLDLKKVAKALGAKKVEADP--VAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARR-
5	HHPRED-l	2dxa_A	1.000	0.969	5.649	threading_5	-TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGD-KHLAVAVTPVAGQLDLKKVAKALGAKKVE-ADP-VAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARR-
6	HHPRED-g	2dxa_A	1.000	0.969	4.819	threading_6	-TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGD-KHLAVAVTPVAGQLDLKKVAKALGAKKVE-ADP-VAQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARR-
7	SP3	1dbxa	0.600	0.943	4.864	threading_7	-TPAIDLLKKQKIPFILHTYDHDP-----GDEAAEKLGIDPNRSFKTLLVAENGDQK-KLACFVLATANLNLKKAAKSIGVKKV-EADKDAAQKSTGYLVGGISPLGQKKRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGAEFTDIVDE-
8	SAM-T99	2dxaA	0.974	0.969	5.838	threading_8	-TPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQVYKTLLVAVNGD-KHLAVAVTPVAGQLDLKKVAKALGAKKVEADPV--AQRSTGYLVGGISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARR-
9	MUSTER	1dbxA	0.593	0.943	3.602	threading_9	-TPAIDLLKKQKIPFILHTYDHDPG-----DEAAEKLGIDPNRSFKTLLVAENGDQK-KLACFVLATANLNLKKAAKSIGVKKVEA-DKDAAQKSTGYLVGGISPLGQKKRVKTVINSTALEFETIYVSGGKRGLSVEIAPQDLAKVLGAEFTDIVDE-
10	SPARKS	2cx5a	0.211	0.956	4.237	threading_10	ARRVQGALETRGFGHLKVVE--LPASTRTAKEAAQAVGAEVGQIVKSLVFVGEK---GAYLFLVSGKNRLDLGKATRLVGGP-LRQATPEEVRELTGFAIGGVPPVGHNTPLPAYLDEDLLGYPEVWAAGGTPRALFRATPKELLALTGAQVADLKEG-

Predicted Tertiary Structure


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TM-score=0.942 to 1dbxA TM-score=0.995 to native SCOP code=d.116.1.1	TM-score=0.944 to 1dbxA TM-score=0.996 to native SCOP code=d.116.1.1	TM-score=0.957 to 1dbxA TM-score=0.933 to native SCOP code=d.116.1.1	TM-score=0.942 to 1dbxA TM-score=0.995 to native SCOP code=d.116.1.1	TM-score=0.942 to 1dbxA TM-score=0.995 to native SCOP code=d.116.1.1

Experimental Structure

Download 2dxaA

SCOP code=d.116.1.1