Template-based Modeling Results for YBFO_ECOLI

Submitted Primary Sequence

>Length 477
MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
CCCCCCCCEECCEEEEECCCCCEEEEEECCCCCEEEECCCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCEEEEECCCCEEEEEECCCEEECCEEEEEEECCCCCCEEEEEECCCCCEEEHHHCCCCCCCCCCCEEEEEEECCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEECCCEECCCCCCCEECCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
523322222112110101331100111122232212123321210111232100111133323220201001112111001111323232212122223210010011111001122332212001212121000102123231010112122321111114311100011211211310212112332222111011212110111212232222222200000012211000001331211100011211212233323313221211011113320000021111012101000301111411110000010112100010011321213111111223322223223112003312231313322213211311132111221101023214321200132213221222320120023021212301311201101001312313021111012002000202232232244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MWPDNRIARDAHYLYRYDRHGRLTEKTDLIPEGVIRTDDERTHRYHYDSQHRLVHYTRTQYAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPQVTWYGWDGDRLTTIQNDRTRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQMLDRLESEILADRVSEESRRWLASCGLTVEQMQNQMDPVYTPARKIHLYHCDHRGLPLALVSTEGATEWCAEYDEWGNLLNEENPHQLQQLIRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVQYIDSMGLASKYGHLNNGGYGARPNKPPTPDPSKLPDIAKQLRLPYPIDQASSAPNVFKTFFRALSPYDYTLYCRKWVKPNLTCTPQDDSQYPGMDTKTASDYLPQTNWPTTQLPPGYTCAEPYLFPDINKPDGPATAGIDDLGEILAKMKQRTSRGIRK
1	SPARKS	3jroa	0.116	0.847	1.305	threading_1	-------------------------------------HNELIHDAVLDYYGKRLATCSSDKEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAIGVNSASWAPATTKESRKFVTGGADNL---VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDV---------------LWRASWSLSGNVLAL---SGGDNKVTLWK--------ENLEGKWEPAGEVHIDNAKLIKERRFTASYTFAKFSTGSLLTKDIVGKSGVSIKRLPTEL--QRKFLFDDVYLDKEIEKVTIEARKSNPYPSESSLLFKDAL--DYEKTSSDYNLWKLSS-ILFDPVSYPY--KTDNDQVKALLKKERHCRLTSWIVS
2	PROSPECT2	1flga	0.076	0.941	2.240	threading_2	DVLQYGMGTHAQRWSPLKQVNAPAWSYSFGDEKQRGQESQDGVIYVTASYSRLFALD---AKTGKRLWTYNHRLPDD-------IRPCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGA-------------GYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYVGVDPSSGEVKWFYQHTPNDAWDFSGNNELAKDGKIVKATAHADRNGFFSNGKLQNAFPFVDNITWASHIDLKTGRPVER-----EGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVHLPLWAGVLATAGNLVTGSGIVSPPTVGYGGAVPLWGGDMADLTRPVAQG
3	HHPRED-l	2fkj_A	0.079	0.587	3.343	threading_3	DLPGEMKV---LVSKEKNKDGKYDLIATVDKLELKNNGSGVLEGVKADKSKVKLTISDDLG----QTTLEVFKEDGKTSEKKITRADK----------SSTEEKFNEKGELSEKKITDKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRAD----------------------------------------------------KSSTEEKFNEKGELSEKKITRADKSST-EEKFNEKGEVSEKIITRADGTRLEYTG---IKSDGSG---KAKEVLKGYVLEGTLTSAWNSGTSTLTITSKKDLVFTKENTITVQQYDSNGTK-----------------------------------------------------------------------------------------LEG----------------------SA-VEITKLDEIKNALK---------
4	HHPRED-g	2fkj_A	0.071	0.650	5.646	threading_4	GTSDKNNGSGVLEGVKADKSKVKLTISDDLG---------QTTLEVFKEDGKTLKVTSKDKSS----TEEKFNEKGELSEKKIADKS------------STEEKFNEKGELSEKKITRADKTEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKITRADKSS-TEEKFNEKGLSEKKITRADKS-STEEKFNEKGEVSEKIITRADGTEYIKSDGSGKAKEVLKGYVLEGTLTAEKTT-LVVKEGTVTLSKNISKSGEVSVELND-----------------TDS-SAATKKTAAWNSGTSTLTITVNSKKTKVFTKENTITVQQYDSNGTKLEG-SAVEITKLDEIKNALK------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1xfdA	0.065	1.000	2.224	threading_5	KIHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLESLRAIRYEISPDREFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLEILKTHIAHWWSPDGTRLAAINDSRVPIMELPTYTGSIYPTVKPYHAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWAQNVSILTLCDATTGVTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHNDNIQSITSGTKILAYDEKGNTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTTNEHVKKAINDRQMPKVATFTDTVDGTPGSQSVAEKFEVSWEHEVRRRLILPAKGENQGQTFTKLYASAFSERYLGLHGLDNRAYEMTKVAHVSALEEQESHYFTSSSLKQHLYRSIINFFVECFRI
6	HHPRED-l	2fkj_A	0.091	0.556	3.274	threading_6	NNGSGVL-----EGVKADKSKVKLTISDDLGQTTLTSKDKSSTEEKFNEKGELSEKKITRA--DKSSTEEKFNEKGELSEKKITRADKSSTEEFNTRADKSSTEEKFNEELSEKKIADKSSTEEKFNEKGELSEKKITRADKSSTEEKFNEKGEVSEKIITRADGTRLEYTGIKSDGKGYTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAAWNSGTSTLTITVNSKKTKDLVFTKENTI-TVQQYDSNGTKLEGSAVEITK------------------------------------------------------------LDEIKNALK------------------------------------------------------------------------------------------------------------------------------------------------
7	HHPRED-g	2fkj_A	0.081	0.721	5.071	threading_7	DL-----PGEMKVSKEKNKDGKYDLIVDKLELKGTSNGSGVLEGVKADKSKVKLTISDDLGQ----TTLEVFKEDGKTLVSKSKDKSS------------TEEKFNEKGELSEKKITRADKSSTEEKFNEKGELSEKKRADKSSTEEKFNEKGELS-----------------------EKKITRADKS-STEEKFNEKGELSEKK-----ITRADKSSTEEKFNEKGELSEKKITRADKSST-EEKFNEKGEVSEKIITRADGTRLEYT---GIKSDG---SGKAKEV-LKGYVLEGTLTAEKTTLVVKEGTVTLSKNISKSGEVSVELNDTDSSAATK--------KTAAWNS-------------------------GTSTLTITVNSKK----TKDLVFTK------ENTITVQQYDSNGTKLEGSAVEITKLDEIK-----------------------NALK---------
8	PROSPECT2	1kb0a2	0.119	0.933	2.143	threading_8	DWPTIGVDYAETRYSRLDQINALAWSYNLESTRGVEATPVDGIMYVSASWSVVHAIDTRTG-----NRIWTYDPQIDRSTGFKGCCDVVNRGVALW---KGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF------------------KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILAGKPRKVILHAPKNGFRTNGKFISAKNFVPVNWASGYDKHGKPIGI------AAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKNGGTLTTAGNPTGTGVVAAPSWGGVYGLAARATERQGPGTE
9	PROSPECT2	3kyaA	0.078	0.860	2.125	threading_9	VETGAFDPSKPVAISDFTGAYQKLLIYGENFGTVKVKIGGKDAIVINVKSTYVYCFVPSGAFSGEIEITVSYEKKVVGTLCGYRNNRDDQGWRDGPFDGPEGVKCCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRLSSPLNINTIPTNRIRSIAFNKKI-----EGYADEAEYIVAIDYDGKGDESPSVYIIKR--------NADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHP---TGKYAYFGVINNHYFRSDYDEIKKEFITPYNFVGGYKQSGYRDDV-------GTEARNNPCQGVFVKNPDYTGEEEYDTPEGIVSTYA-------------------GRGASTSLADGNQWGTDDGDLREVARFRDVSYDDVKESEQE-------------------------E
10	PROSPECT2	2cn2A	0.102	0.990	2.120	threading_10	VNETEKARADIGGAYRWDPSTETWIPLLDHFQDEYSYYGVESIATDPVDPNRVYIVAGYTNDWLPNGAILRSTDRGETWEKTILPFKGGNPGRSNPGTIIGVVWVVFDTKTIYVGVADKNESIYRSTDGGVTWKAVPGQPKGLLPHHGVLASNGLYITYGDGKGQVWKFNTRT-----GEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIVTSNAWWPDEYIFRSTDGGATNIWEWGYPERILHYEIDISAAPWLDWGTEKQLPEINPKLGWIGDIEIDPFNSDRYVGGKVKIEVKATGISPPEGAPLVSAVGDLVGFVDDLKVGPKKHVPSYSSGTGIDYAELVPNFAVKKISFSYDGGRNWFQPPNEAPNSVGGGSVAVAADAKSVIWTPENASPAVTTDNGNSWKVCTNLGGAVVASDRVNGKKTDTKAPQLPKSVNKIKAVPGKEGHVKLSNVDTAHVVGFGKAAPGQDYAS

Predicted Tertiary Structure


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TM-score=0.584 to 1rwiA SCOP code=b.68.9.1	TM-score=0.650 to 1vyhT SCOP code=b.69.4.1	TM-score=0.788 to 1flgA SCOP code=b.70.1.1	TM-score=0.327 to 1h3iA SCOP code=b.76.2.1	TM-score=0.528 to 1p4pA SCOP code=b.76.1.1