Template-based Modeling Results for YBGL_ECOLI

Submitted Primary Sequence

>Length 244
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAGSELIRAGKQYGLTTREEVFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRLRSAFAEKGIVVAA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAGSELIRAGKQYGLTTREEVFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRLRSAFAEKGIVVAA
CEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCEEEEEEEECCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHCCCEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAGSELIRAGKQYGLTTREEVFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRLRSAFAEKGIVVAA
2100000211210220120020000000000000001300100021024110000000101122200212130113100110010000011004222020100202000001003123002000200130132000000001300200341202000100022212130100112222221311320021012103312020121220201020000011033002002200200343312023
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQIMQACVREAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLAGSELIRAGKQYGLTTREEVFADRGYQADGSLVPRSQSGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLHGDGEHALAFARRLRSAFAEKGIVVAA
1	MUSTER	2dfaA	0.465	0.988	3.574	threading_1	MKVDLNADAGESYGHDREIFPLVSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPGTVYEEEARKAGLRVVLEAFPERAYLRSGQLAPRSMPGSWITDPEEAARRALRMVLEGKVEALDGGEVAVRADTLCIHP---NAPEVARAVREALEQAGVEVRA
2	SPARKS	1v6ta	0.431	0.980	6.365	threading_2	MRVDLNSDLGESFGLDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFADRAYNPDGTLVP-----AVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEEEGVKIVP
3	PROSPECT2	2dfaA	0.465	0.988	4.600	threading_3	MKVDLNADAGESYGHDREIFPLVSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPGTVYEEEARKAGLRVVLEAFPERAYLRSGQLAPRSMPGSWITDPEEAARRALRMVLEGKVEALDGGEVAVRADTLCIHPN---APEVARAVREALEQAGVEVRA
4	PPA-I	2dfaA	0.465	0.988	5.620	threading_4	MKVDLNADAGESYGHDREIFPLVSSANLACGFHGGSPGRILEAVRLAKAHGVAVGAHPGFPDLVGFGRREMALSPEEVYADVLYQIGALSAFLKAEGLPLHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLPGTVYEEEARKAGLRVVLEAFPERAYLRSGQLAPRSMPGSWITDPEEAARRALRMVLEGKVEALDGGEVAVRADTLCIHP---NAPEVARAVREALEQAGVEVRA
5	HHPRED-l	1v6t_A	0.433	0.975	7.217	threading_5	MRVDLNSDLGESFGRDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFADRAYNPDGTLVP-----AVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEEEGVKIV-
6	HHPRED-g	1v6t_A	0.431	0.980	5.931	threading_6	MRVDLNSDLGESFGRDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFADRAYNPDGTLVP-----AVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEEEGVKIVP
7	SP3	1v6ta	0.431	0.980	6.566	threading_7	MRVDLNSDLGESFGLDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFADRAYNPDGTLVP-----AVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEEEGVKIVP
8	SAM-T99	1v6tA	0.431	0.980	6.766	threading_8	MRVDLNSDLGESFGLDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFADRAYNPDGTLVP-----AVIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEEEGVKIVP
9	MUSTER	1v6tA	0.427	0.980	3.497	threading_9	MRVDLNSDLGESFGLDEEVMKYITSANVACGWHAGDPLVMRKTVRLAKENDVQVGAHPGYPDLMGFGRRYMKLTPEEARNYILYQVGALYAFAKAEGLELQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLSNSRVADIAEEMGLKVAHEVFADRAYNPDGTLVPA-----VIEDKEEIAERVISMVKDGGIRAINGEWVDLKVDTICVHGDNPKAVEITSYIRKVLEEEGVKIVP
10	SPARKS	2xu2a	0.386	0.955	5.886	threading_10	-RILLNCDMGESFGDDVHSMPLVDQANLACGFHAGDPLTMRRAVELAVRHGVSIGAHPAYPDLSGFGRRSLACSAEEVHAMVLYQIGALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLANGRELELADEADVPLLFEAFADRAYLPDGRLAPRRLGGAVHHDPQRIIEQALAIARGEAFPDYDGNPLRLTADSLCVHGDNPQSLAVLRRLRAA----------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.977 to 2dfaA TM-score=0.935 to native SCOP code=c.6.2.5	TM-score=0.977 to 2dfaA TM-score=0.933 to native SCOP code=c.6.2.5	TM-score=0.965 to 1v6tA TM-score=0.944 to native SCOP code=c.6.2.5	TM-score=0.978 to 2dfaA TM-score=0.939 to native SCOP code=c.6.2.5	TM-score=0.977 to 2dfaA TM-score=0.935 to native SCOP code=c.6.2.5

Experimental Structure

Download 1xw8A

SCOP code=c.6.2.5