Template-based Modeling Results for YBJE_ECOLI


  Submitted Primary Sequence

>Length 299
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
21100000000000010031233200300220000000000000001012132012101100000000000000000000000130122323333342212120002001000000000000000111122021001000000000000203231211310111130000000100010000000010131212100000110000000000002000110000000010021000000000003202010000000000000000013113210000000100000000100111105
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
1MUSTER3zuxA0.1120.9231.050threading_1GKTFSLWAALFAAAAFFAP----DTFKWAGPYIPWLLGIIMFGMGLTL-KPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL----------NLP---AEIAVGVILVGCCTASNVMTYLARGNVAVTSVSTLTSPLLTPAIFLMLAGEM----LEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKDALPLVSVAAIV-LIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPALTIVGMQNSGLAAALAAAHFAPVVAVPGALFSVWHNISGSLLATYWAA
2SPARKS2xwub0.1030.9401.070threading_2QYESLKAQLFTQITR--FASGSKIVLTRLCVALASLALSMMP------DAWPCAVADMVRLFQAPVDGQGRCLALLELLTVLPEEFQTSRLPQYR------KGLVRTSLAVECGAVFPLLEQLLQQP--SSPSCVRQKVLKCFSSWVEVPLQDCEALIQAAFAAFDSSVEAIVNAISQPDAQRYVNTLLKLGLQEQLRQAVQNGTSHGICRIAVALGENHSRALLDQVEHWQSFLALVNMIMFCTGIPGHY--PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV
3PROSPECT21ejlI0.1001.0001.606threading_3IVKGISQLQATQAARKLLSREKQPPIDNIIRPIQFESAWALTNIQTKAVVDGGAIPAFAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLILPTLVRLLHHNDPEVLADSCWAISYLRIEMVVKKGVVPQLVKLTELPIVTPALRAIGNIEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSEQIVYLVIEPLMNSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQIEKYFS
4PPA-I3zuxA0.1090.9501.583threading_4GKTFSLWAALFAAAAFFAPDTFKWAGPY----IPWLLGIIMFGMGLTL-KPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL----------NLPAEIAVGVILVGCCPGGTASNVMTYLARGNVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPALTIEVGSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAA
5HHPRED-l3zux_A0.1400.7890.972threading_5GKTFSLWAALFAAAAFFAPDTFK----WAGPYIPWLLGIIMFGMGLTLKP-SDFDILFKHPKVVIIGVIAQFAIMPATAWCLS-KLLNLPAATYLARGNVALSVAVTMMSIVKMVLLPIVLGLIVHKVLGSTPLVSVAAIVLII---GAVVGASKGKIME--SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIGMQNSGLAAALAAAHFAPVVAVPGALFSVWHNISGSLLATYWAAKA----------------------------------------------------
6HHPRED-g3zux_A0.1340.7761.816threading_6ILSFSLWAALFAAAAFFAPDTFK----WAGPYIPWLLGIIMFGMGLTLKPSD-FDIHPKVVIIGVIAQFAITSVSTLLLTPAIFLMLAG----EMLEIQ-AAGMLMSIVMVLLPIVLGLIVHKVLGSKTEKLPLVSVAAIVLI---IGAVVGASKGKIME--SGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIGMQNSGLAAALAAAHFAPVVAVPGALFSVWHNISGSLLATYWAAKA----------------------------------------------------
7SP31nnja0.1710.8390.913threading_7LVETVRRELEKRIVGQKIIATYPRMV------LTGFEQLKKELTGKTIQGISRRGKYL--IFEIGDDFRLISHLRMEGKYRLATLDAPREKHD-------HLTMKFADGQLIYADVRKF--GTWELIS------TDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKK------------IKPYLLEQTL---VA---GLGIYVDEVLWLAKIHPEKETNESSIHLLHDSIIEILQKAIKLGGSSIAL-GSTGK--MQNELQVYGK-TGE---KCSRCGAEIQKIKVAGRGTHFCP
8SAM-T992eqkA0.1690.2580.586threading_8---------------------------------------------------------------------GSSGSSGMIAAYENSKWEPVKDMHCAVKIQDKNQWRRGQI----------------------IRMVTDTLVEVLLYDVGVELVVNVDCLRKLEENLKTM-----------------------------------------------------------------------------------------------------------------------------------
9MUSTER3g61A40.0760.9630.829threading_9LAISPVLGLSAGIWAKILSSKELHAYAKAGAVIRTVIAKELERYNNNLEEA-GIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSLDEDVPPASFWRILKLNSTEWPFVVGIFCAIIN-------GGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIKTPEIDSY---
10SPARKS2bkub0.0840.9131.016threading_10QRTYYVHQALPSILNLMNDQSLETTAWCIGRIADSVAESI---------DPQQHLPGVVQACLIGLQHPKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADFFRLLEKKD-------SAFIEDDVFYAISALAASLGKGFEKYLETF-SPYLLKALNQVDSPV--SITAVGFIADISNSLEEDFRRY-------SDAMMNVLAQMISN

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.417 to 1pw4A
SCOP code=f.38.1.1
TM-score=0.432 to 2nxpA
SCOP code=d.379.1.1
TM-score=0.609 to 1u6gC
SCOP code=a.118.1.2
TM-score=0.722 to 1wa5B
SCOP code=a.118.1.1
TM-score=0.420 to 1pw4A
SCOP code=f.38.1.1