Template-based Modeling Results for YCBF_ECOLI


  Submitted Primary Sequence

>Length 236
MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
CCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEECCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCCCCEEECCCEEEECCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCHHHHHHHCEEEECCCEEEEECCCCEEEEEEEEEECCEECCCCCEECCCCCEEEECCCCCCCCEEEEEEEECCCCCCCCEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
54211010010000000000002000000010000002344310101001224221001010021232222322223120000010010233320011001133321323211000000120122424421020001000200010321322222013312122232001012222100000101032221332110013222202124222202000100002102122122214
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRFIFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPAPLLAAPPLILLKPGTTGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPGDPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNVGVVPPKSQRQTSWCQAIAPCHVAWRAINDYGGLSAKKEQNLP
1MUSTER2co6B0.3060.8732.888threading_1------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKAADKS-------SPAPFLVMPPLFRLEANQQSQLRIVRTGGD-MPTDRETLQWVCIKAVPPENEATLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGS--HGDIEWRVITDFGGESHPFHYVL-
2SPARKS1p5ua0.2920.8565.414threading_2----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENK----------EPFVVTPPLFRLDAKQQNSLRIAQAGG-VFPRDKESLKWLCVKGIPPKDPDKVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSI-PSHYIPPKSTWAFDLPKGLAGRNVSWRIINDQGGLDRLYSKNVT
3PROSPECT21p5uA0.2920.8563.886threading_3----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDEN----------KEPFVVTPPLFRLDAKQQNSLRIAQAG-GVFPRDKESLKWLCVKGIPPKDPDKVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSIPSH-YIPPKSTWAFDLPKGLAARNVSWRIINDQGGLDRLYSKNVT
4PPA-I2co6B0.3010.8732.876threading_4------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKAADKS-------SPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDRETLQWVCIKAVPPENEPGLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGS--HGDIEWRVITDFGGESHPFHYVL-
5HHPRED-l2co7_B0.3100.8355.638threading_5---------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAAD-------KSSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDRETLQWVCIKAVPPE---TLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLN------HGDIEWRVITDFGGESHPFHYVL-
6HHPRED-g2co7_B0.3110.8314.925threading_6---------------------ATKLFSVKLGATRVIYHAGTAGATLSVSNPQNYPILVQSSVKAADKS-------SPAPFLVMPPLFRLEANQQSQLRIVRTG-GDMPTDRETLQWVCIKAVPPE----LDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLN------HGDIEWRVITDFGGESHPFHYVL-
7SP31p5ua0.2870.8565.207threading_7----------------------SKEYGVTIGESRIIYPLDAAGVMVSVKNTQDYPVLIQSRIYDENKE----------PFVVTPPLFRLDAKQQNSLRIAQAGG-VFPRDKESLKWLCVKGIPPKDPDGVFVQFAINNCIKLLVRPNELKGTPIQFAENLSWKVDGGKLIAENPSPFYMNIGELTFGGKSI-PSHYIPPKSTWAFDLPKGLGARNVSWRIINDQGGLDRLYSKNVT
8SAM-T993dpaA0.2670.8564.703threading_8--------------------------AVSLDRTRAVFDGSEKSMTLDISNDNKLPYLAQAWIENEN-----QEKIITGPVIATPPVQRLDPGAKSMVRLSTTPDSKLPQDRESLFYFNLREIPPRSEKANVLQIALQTKIKLFYRPAAIKTRPNEVWDQLILNKVSGGYRIENPTPYYVTVIGLGGSEKQAFETVMLSPRSEQTVKSANY---NTPYLSYINDYGGRPVLSFICNG
9MUSTER3q48A0.3350.8092.873threading_9----------------------------IAQGTRVVFPASEREVTLRVSNTSGTPVLAQAWIDDGRQDVPPE--ELQVPFSVTPAVTRVEPNGGAVLRIAYLKA-PLPTDRESLFWLNILEVPP--------RFSFRSRFKLFFRPSQLKS-VDSAAGKLQWKFL-EVVQVNNPTPYYVSFASVELIGRVMSGKGMVAPFSTKEFDWM---EAASVRYEVINDYGGRNT-HDRALG
10SPARKS2co6b0.3010.8735.300threading_10------------------LNSATKLFSVKLGATRVIYHAGTG-ATLSVSNPQNYPILVQSSVKAADK-------SSPAPFLVMPPLFRLEANQQSQLRIVRTGG-DMPTDRETLQWVCIKAVPPENEPGLDLNLSINACDKLIFRPDAVKGTPEDVAGNLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGS--HGDIEWRVITDFGGESHPFHYVL-

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.906 to 2co6B
SCOP code=b.1.11.1
TM-score=0.918 to 2co6B
SCOP code=b.1.11.1
TM-score=0.895 to 1p5uA
SCOP code=b.1.11.1
TM-score=0.894 to 1p5uA
SCOP code=b.1.11.1
TM-score=0.918 to 2co6B
SCOP code=b.1.11.1