Template-based Modeling Results for YCEA_ECOLI

Submitted Primary Sequence

>Length 350
MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLCIPDPTE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLCIPDPTE
CCHHHHHHCHHHHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCHHHCCCCCCHHHHHHHHHCCCEEEEECCCHHHHHCCCCCCCCCCCHHHHHHCHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHCEEEEECCCHHHHHCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLCIPDPTE
23111121123102221223232100000010031210310120012002313010100003300101010002102101100231122031020111233323113213132322000000222312022013202121022003332000010212211210203201102031033202201421323332200000200210220011044211320100210012003313432120202130111334223412332122022011202122203222010100002100232331003202322221232122131023212310332323122222234347
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDALYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDDGKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRRRRAGRENGNKIFNKSRGRLNTTLCIPDPTE
1	MUSTER	1yt8A1	0.133	0.903	0.822	threading_1	IAV----RTFHDIRAALLAR-RELALLDVFANLPLSR---LELEIHARVPRRDTP-ITVYDDGE---------GLAPVAAQRLHDL--GYSDVALLSGWRNAGGE------LFRDVNVPSKAFGELVEAERHTPSLAAEEVQALLDRAEAVILDARRFDEYQ-TSIPGGISVPGAELVLRVAELA----PDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNVAALRNGTIGWTLAEHGQTRRFGAISQDTRKAAAQRARAVADRAGVERLDLAGLAQWQD--EHDRTTYLLDVPEEYEALPGSRSQLVQETDHVASVRGSASWLAQGWQVAVLD-SEADFSERGAWSAPLP
2	SPARKS	2kl3a	0.206	0.360	1.817	threading_2	-----------------------------------------------------------------------------------------------------------------------------------MEPQSDAHVLKSRLEEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASS-----SLEKSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAAWKA----IGGPTEGIIESRTDDYNVVSRLEHHHHHH------------------------------------------------------------------------------------
3	PROSPECT2	1yt8A1	0.140	0.857	1.664	threading_3	IA----VRTFHDIRAALLA-RRELALLD------VREEDPFLSRLELEIHARVPRRITVYDDGEG---------LAPVAAQRLHDLG--YSDVALRNAGGELFRDVNVPSK----------AFGELVEAERHTPSLAAEEVQALLDRAEAVILDARRFDEYQ-TSIPGGISVPGAELVL----RVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPPVAALRNGTIGWTL--AGQQLEHGQTRRFGAISQDTRKAAAQRARAVADRAGVERAQWQDEHDRTTYLLDVRTPEEYEAGYRRPYEGTDNPREAQGYLDWEFGLVEQLGRD-----------GTHGFFVIE
4	PPA-I	1qxnA	0.152	0.377	1.386	threading_4	---------------------------------------------------------------------------------------------------------------ADMGEKFDATFKAQVKAAKADMVMLSPKDAYKLLQEPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKSG-LDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEELDRSHHHHHH----------------------------------------------------------------------------------------------------------
5	HHPRED-l	1gmx_A	0.196	0.306	2.248	threading_5	---------------------------------------------------------------------------------------------------------------------------------MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMR------DNDFDTPVMVM-YHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAEV----AYGA-------------------------------------------------------------------------------------------------------
6	HHPRED-g	1gmx_A	0.196	0.306	1.967	threading_6	---------------------------------------------------------------------------------------------------------------------------------MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAF---MRD-N--DFDTPVMVM-YHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAE----VAYGA-------------------------------------------------------------------------------------------------------
7	SP3	1qxna	0.199	0.389	1.756	threading_7	---------------------------------------------------------------------------------------------------ADMGEKFDAT---FKAQV---------KAAKADMVMLSPKDAYKLLQEPDITLIDVRDPDELKAMGKPDVKNYKHMSRGKLEPLLAKS-GLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLE----EGLP--------SLDRSHHHHHH------------------------------------------------------------------------------------------
8	SAM-T99	1qxnA	0.208	0.343	2.078	threading_8	------------------------------------------------------------------------ADMGEKFDATFKA---------------------------------------QVKAAKADMVMLSPKDAYKLLQEPDITLIDVRDPDELKA-----MGKPDVKNYKHMSRGKLEPLGLDPEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDKWLEEGL------------------------------------------------------------------------------------------------------------------
9	MUSTER	3nt6A2	0.192	0.580	0.712	threading_9	LAVGATGKNEKQLKQA---AFEKVYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGI-------DKRIDVAVAQRAGTVEQLQHLEL-----SYAPPYGS------KDVINQAAFVASNIIKGDATPIHFDQIDNL--SEDQLLLDVRNPGELQNGGLEGAVNIPVDELRDR--------ELPKDKEIIIFSQVGLRGNVAYRQLVNNGYR-ARNLIGGYRTYKFAS-------------------------------------------------------------------------------------------------------------------
10	SPARKS	1gmxa	0.206	0.306	1.813	threading_10	---------------------------------------------------------------------------------------------------------------------------------MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLTNDT-------LGAFMRDNDFDTPVMVMYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPAEVAYGA-----------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.795 to 1yt8A SCOP code=c.46.1.2	TM-score=0.764 to 1yt8A SCOP code=c.46.1.2	TM-score=0.550 to 1gn0A SCOP code=c.46.1.3	TM-score=0.742 to 1yt8A SCOP code=c.46.1.2	TM-score=0.593 to 1qxnA SCOP code=c.46.1.3