Template-based Modeling Results for YCFP_ECOLI

Submitted Primary Sequence

>Length 180
MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFKTLG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFKTLG
CEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHHCCHHHEEEEEECCCCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFKTLG
100000012122301111001210122203101110311321022003102301332333200000000000002100100302000000101112102221332332122012001212332331000001232220202200210340110001243113042022003202202314
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQHLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKIDRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQTHKFKNISPHLQRIKAFKTLG
1	MUSTER	2qjwA	0.130	0.856	1.472	threading_1	HCILAHGFESGPDALKVTALAEVAERLGWTHERPDLGDVRGRLQRLLEIARAATEKG---PVVLAGSSLGSYIAAQVSLQVPTRLFLVPP----------TKGPLPALDAA------------AVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAVQAASRAFAELLQL-
2	SPARKS	2wtma	0.167	1.000	1.717	threading_2	LCIIIHGFTGHSEERHIVAVQETLNEIGVATLRADMYTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERDILIPLSPAAMIPEIARELLGLKFDPENNYVRVAQTIREDFVDKVLIVHGDQDEAVPYEASVAFSKQYKKLVTIPGDTHCYHHLELVTEAVKEFMLEA
3	PROSPECT2	2qjwA	0.114	0.878	1.714	threading_3	HCILAHGFESGPDALKVTALAEVAERLGWTHERPDFGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFVPPTKGPLPAL----------------------DAAAVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAVQAASRAFAELLQSL
4	PPA-I	2qjwA	0.101	0.883	1.938	threading_4	HCILAHGFESGPDALKVTALAEVAERLGWTHERPDLGQLGDVRGRLQRLLEIARAATEKGPVVLAGSSLGSYIAAQVSLQVPTRALFL---------VPPTKGPLPALDAA------------AVPISIVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAVQAASRAFAELLQSL
5	HHPRED-l	1uxo_A	0.111	0.950	1.381	threading_5	QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILN-PNPLPRLEDWLDTLSLYQHTLH-ENTYLVAHSLGCPAILRFLEHLQLRGIILVSGFAKSLPTLQ-LDEFTQG-SFDHQ----KIIESAKHRAVIASKDDQIVPFSFSKDLAQQDAALYEVQHGGHFLTSLPIVYDVLTSYFSK-
6	HHPRED-g	1uxo_A	0.119	0.933	1.264	threading_6	QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILN-PNPLQRLEDWLDTLSLYQHT-LHENTYLVAHSLGCPAILRFLEHLQLRGGIILVSAKSLPTLQ--LDE------FTQGSFDHQKIESAKHRAVIASKDDQIVPFSFSKDLAIDA-ALYEVQHGGHGFTSLPIVYDVLTSYFSK-
7	SP3	3pf8a	0.140	0.989	1.615	threading_7	MAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLVVLLAPAATLKGDAQGVTYNPDHIPDLGGFYLRIAQQLPYEVVCLIHGTDDTVVSPNASKKYDQIYQTLHLIEGADHCFSDQKNAVNLTTDF--LQ
8	SAM-T99	2qjwA	0.127	0.878	1.152	threading_8	-CILAHGFESGPDALKVTALAEVAERLGWDLDARRDLGQLGDVRGRLQRLLEIARAATEKPVVLAGSSLGSYIAAQVSLQVPTRALFLVPPTKGPLPALDAAAVPIS---------------------IVHAWHDELIPAADVIAWAQARSARLLLVDDGHRLGAVQAASRAFAELLQSL
9	MUSTER	1uxoA	0.099	0.950	1.424	threading_9	QVYIIHGYRASSTNHWFPWLKKRLLADGVQADILNPNPLQPRLEDWLDTLSLYQHTL-HENTYLVAHSLGCPAILRFLEHLQLRIILVSGFAKSLPTLQLDEFTQGSFD---HQKIIES----AKHRAVIASKDDQIVPFSFSKDLAQQIAALYEVQHGGHGFTSLPIVYDVLTSYFSK-
10	SPARKS	3pf8a	0.134	0.994	1.705	threading_10	MAIIFHGFTANRNTSLLREIANSLRDENIASVRFDFNTVLNEIEDANAILNYVKTDPHVRNIYLVGHSQGGVVASMLAGLYPDLVVLLAPAATLKGDAQGVTYNPDHIPDLGGFYLRIAQQLPTKPVCLIHGTDDTVVSPNASKKYDQIYSTLHLIEGADHCFSDQKNAVNLTTDFLQN-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.730 to 1uxoA SCOP code=c.69.1.31	TM-score=0.740 to 1uxoA SCOP code=c.69.1.31	TM-score=0.736 to 1uxoA SCOP code=c.69.1.31	TM-score=0.730 to 1uxoA SCOP code=c.69.1.31	TM-score=0.747 to 1uxoA SCOP code=c.69.1.31