Template-based Modeling Results for YCHG_ECOLI

Submitted Primary Sequence

>Length 299
MPLLNDLLDFSDHPLMPPPSAQLFAEHLPTEWIQHCLTLSAHATVRRRRLPGDMVIWMVVQNEPITDVVRRLNLSADGEAGMNLLARSAVTQARQRVGAAPVEWLFRQTAQDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKNIASEMIELGNTASPGTIPKRLEHLRGALEVVFITKRPRPSRPRSVKISKTRYPVKHSAAPLK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MPLLNDLLDFSDHPLMPPPSAQLFAEHLPTEWIQHCLTLSAHATVRRRRLPGDMVIWMVVQNEPITDVVRRLNLSADGEAGMNLLARSAVTQARQRVGAAPVEWLFRQTAQDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKNIASEMIELGNTASPGTIPKRLEHLRGALEVVFITKRPRPSRPRSVKISKTRYPVKHSAAPLK
CCCHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHCCCEECCEECCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEECCCCHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCCCCCHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MPLLNDLLDFSDHPLMPPPSAQLFAEHLPTEWIQHCLTLSAHATVRRRRLPGDMVIWMVVQNEPITDVVRRLNLSADGEAGMNLLARSAVTQARQRVGAAPVEWLFRQTAQDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKNIASEMIELGNTASPGTIPKRLEHLRGALEVVFITKRPRPSRPRSVKISKTRYPVKHSAAPLK
54113201210322122131031003202231032002212312223120101000000022210210021012102232122210320002014312220022002100211023322332120000000100102012323012211212222443221010000000100120000000012432121001100220231000000210001100000233112000001024311110021131222221233033043212000012224323221010010102131222224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MPLLNDLLDFSDHPLMPPPSAQLFAEHLPTEWIQHCLTLSAHATVRRRRLPGDMVIWMVVQNEPITDVVRRLNLSADGEAGMNLLARSAVTQARQRVGAAPVEWLFRQTAQDRGAERYLKDDWHGLQLFAIDGAQFRTPDKPELREYYGSANTSTKRQNAYPVMRLVALMNLGSHILLNAVTAPYRQSETVLAHSMLATIPDNSITLFDKLFYSEDLLLTLNQKGCNRHWLLPAWKNIASEMIELGNTASPGTIPKRLEHLRGALEVVFITKRPRPSRPRSVKISKTRYPVKHSAAPLK
1	PROSPECT2	3hosA	0.109	0.893	1.323	threading_1	VPTRTVLIFCFHLKKTAAESHRMLVEAPTVKTCERWFQRDKEHGKPPKRYEDAELQALLDEDQTQKQLA-----------EQLEVSQQAVSNRLREMGNERQMERRKNTCEILLSRYKRKSFLHRIVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLEYRVIFLHDPSHTARAVRDTLETLNW--------------EVLPHAAYSPDLAPSDYHL-------FASMGHALAEQRFDWLDEWFAAKDDEFYWKYFE
2	HHPRED-l	1mus_A	0.148	0.813	1.375	threading_2	------------SAL-----------HRAADWAKSVFSSAALGDPRRARLVN-VAAQLAKSGKSITISSEAQEGFIRN----PNVSAEAIRK-----------AGAMQTVKLAQ----E----FPELLAIEDTTSLSYRH--QVAEELGKLGSIQKASRGW-WVHSVLLLEATTFRTVGLLHADADEKEKWLSRLRMGSMMSNVIAVCDREADIHAYLQDKLAHNE--RFVVRSKHPRKDVESDHLNQPELGGKRKNRPARKASLSLRSGRITLKQGNKWLLLTSE---PVESLAQAL-
3	PROSPECT2	1l5aa	0.075	0.977	1.321	threading_3	MLLAQKPFWQRHLAYPHINLTTLLLRALAEPLAWRQIEQDLQRSSTLIDAPIGYGMMLFEQ---RLSQHYQSLLSGQTPTAAFKPYQSYLEEEAAYLTSHRYWQDKQFWQGYLREAPDLTLTSATYDPQLSHAVSLSYTLNSQLNHLLLKLANANQIGAEPDAPWLWLPFMNRWGSVAANVPGLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQ----SYFMSPFINILPFESPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITADLASLARFQQVEQ
4	PROSPECT2	2bibA1	0.071	0.896	1.305	threading_4	TGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLD----------FILVTHTHSDHIVDELLSTYPVDRVYLKKYSDSRITNSERLWDNLYGYDKVLQTATETGVSVIQNITQGDAHFQFGDMDIQLYNYE------NETDSSGELKKIWDDNSNSLISVVKVNGKKIYLGGDLDNVHGAEDKYGPLIGKVDLMKFDTNKSNTKDFIKNL----SPSLIVQTSDSLPWK-------NGVDSEYVNWLKERGI----ERINAASKDYDATVFDIRGFVNISTSYKPIPS
5	PROSPECT2	2f8lA	0.057	0.883	1.290	threading_5	ANATQELFQVLDN------TAIILQNELELEAVYETGENLFQKEVLQKEEKQLKLQASYLENFSNEEIRKGLQLALLKGKHGIQ--------VNHQTPDSIGFIVAYLLEKVIQKKKNELKGDVDVHASGVDVDDLLISLALVGADLQRQKTQDGLANLLVDPVDVVISDYYPDDENAKTFELCREEGHSFAHFLFIEQGRYTKLVPDAFGTSDFAKVDKFIKKNGHIEGIIKLPETLFK---------------------SQARKSILILEKADVDVKPPKEVLLANLSLAEIENWFK
6	PROSPECT2	1q7mA1	0.076	0.876	1.283	threading_6	MRNRREVSKLLSERVYGYDDLPEELNIKAPDVVLKVHRSYIESGSDVILTNTFGATRMKLRKHGLEDKLDPIRAAGEKLVFGDIGPTGELPYPLGSTLFEEFYENFRETVEIMVEEGVD--------GIIF----ETFSDILELKAAVLAAREVSRDVF------LIAHMTFDEKG-----RSLTGTDPANFAITFDELDIDALGINCSLGPEEILPIFQELSQYTDKFLVVEPNAGKPIVENGKTVYPLKPVHIDSYYELGVNIFGKLFRKVLGNRKPL--------------QRKKK
7	MUSTER	3hotA	0.090	0.933	0.644	threading_7	EQTRTVLIFCFHLKKTAAESHRMLVEAFTVKTCERWFQRFKEHGKPPKRYEDAELQALLDEDDAQT--QKQLAEQLE-------VSQQAVSNRLRELNERQMERRKNTCEILLSRYKRKSFLHR---IVTGDEKWIFFVNPKRKKSYVDQPATSTARPNRFGKKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLYQHRVIFLHPSHTARAVRDTLETLNWEVLPHAAYSPDLA-----PSDYHLFASMGHALAEQRFDSYESVKKWAKDDEFYWRGIHKLPE--WEKCVAS-D
8	SPARKS	1lvaa	0.111	0.813	0.550	threading_8	-GSPEKILAQIIQEHREGLDWQEAATRLSLEETRKLLQSAAAGQVTLLRVNDLYAISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRFSRLPARVYQALLEEWSR------------EGR--LQLAANTVALAGSETQKKLLKDLEDKRVSRWQPPSFK-----EVA---------GSFNLDPSELEELLHYLVREGVLVKINDEYWHRQALGEAREVIKNL-----ASTGP-----------FGLAEARDALGSSRKYVLPLLEYLDQVK-----FTRRKRVVVGN------
9	PROSPECT2	1m5ya	0.074	0.953	1.233	threading_9	VDLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKILNYNTYRNQIRKEMIISEVRNNEVRRRITILLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQ-ELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESARHILLKPSPIMTDEQARVKLEQI----AADIKSGKTTFAAAAKEFSQDPG-------SANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPV--HSSFGWHLIELLDTRNVDRAYRMLMLS
10	PPA-I	3hotA	0.058	0.916	0.712	threading_10	KTAAESHRMLVEAFGEQVPTVKTCERWFQRFKSGDFDVDDKEHGKPPKRYEDAELQALLDEDDSQQAVSNRLREMGKIQKVGRWVP--------HELNERQMERRKNTCEILLSRYKRKSFLHR---IVTGDEKWIFFVNPKRKKSYVDPGQPATSTARPNRKTMLCVWWDQSGVIYYELLKPGETVNAARYQQQLINLNYQHRVIFLAPSHTARAVRDTLETLNWEVLPHAAYSPDLA-----PSDYHLFASMGHALAEQRFDSYESVKK---------WLDEWFAAKDDEFYWRGIH

Predicted Tertiary Structure


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TM-score=0.468 to 1c0mC SCOP code=b.34.7.1	TM-score=0.545 to 3ecpA SCOP code=c.55.3.4	TM-score=0.607 to 1l5aA SCOP code=c.43.1.2	TM-score=0.866 to 2bibA SCOP code=b.109.1.1	TM-score=0.764 to 2f8lA SCOP code=c.66.1.45