Template-based Modeling Results for YCIB_ECOLI


  Submitted Primary Sequence

>Length 179
MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
43201200000000000100100000000000000000001022320221000000000000000000223200100000000000000000110132100110123212013100010010000000000000100011012100010200000000000000001001321234444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRFRKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQRMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLIFTLLSGIYIYRHMPQEDKS
1SPARKS2x1gf0.0610.9111.365threading_1AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIEG-CVTITAVLLEVVHKCYWPCIHGCMTADENELAESCLKTMVNIIIQPDCHNY---------------PKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPE
2PROSPECT21pw4A20.1200.9781.178threading_2NKLLWYIA-IANVFVYLLRYGILAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPV---MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIHEQLLQELVP
3PPA-I3rceA10.1920.6981.470threading_3---LVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLWWY-----PSSYSLNFAMIGLFGLYTLVFHRKE--------KIFYLAIALMIIALSMLA--------------------------WQYKLALIVLLFAIFAFKEEKINFYMIWALIFISISILHLSGG------------
4SPARKS2xwub0.0850.9891.167threading_4IPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQ--VEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQLVDVLLHKAQFPSDEEYSDEKEQFRIYRVDISDTLMYVYEMLGAELYDKLGRLLYSWQHTEALLYGFQSIAETIDVNYSD
5PROSPECT21oyzA0.0891.0001.081threading_5DDELFRLLSLKRISSARVLQLRGGQDAVYIRRDIGAFILGQIKICKKCEDNVFNILNTAIESTAQRCKKNPIYSPKIVEQSQITTNVRRATAFAISVIATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVELQDKNEEVRIEAIIGLSDDIIEAAGELPVLDTLYKFDDNS
6PPA-I1pw4A20.1030.9781.295threading_6RYGILDWSPTYLKLDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGN--RGATGVFFMTLVTIATIVYWMNPA--GNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQEL
7SPARKS2bkub0.0900.9331.127threading_7VSSSNNILIAIVQGA---QSTETSKAVRLAALNALADSLIFIK-NNMEREGERNYLMQVVCEAT----QAEDI-EVQAAAFGCLCKIMSKYYTFMKPEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL---TRQNEDPED
8PROSPECT21t33A0.0910.8601.069threading_8MNQLIAAA-LAQFGAITYYFGSKEDLYLACAQWIADFLAERLFSQPAPDRDAIRELILLACKNMIMLLTQE----------DTVNLSKFISREQLSPTSAYQLVH-------EQVIDPLHTHLTRLVAA-------YTGCDANDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDQ
9PPA-I3kz9C0.1000.9501.234threading_9LSPLKRKQQLEIALEVFARRGIGRGGHADIAEIAVSVATVFNYFP--TREDLVDEVLNHVVRQFSNFLSDNI--DLDLHAKENIANITNAIELVVQDNHWLKVWFEWSASTRDEVWPLFVTTNRTNQLLVQNFIKAIERGEVCDQHN-----PEDLANLFHGICYSLFVQANRTNNTAE
10SPARKS3m1ic0.1180.9501.118threading_10QEILTKFQPDAWQKADQILQFSTNPQSKFIALSILDKLITR-KWKLLP-NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQEFIPELIGSS----SSSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQ---GSSSSL

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.895 to 1pw4A
SCOP code=f.38.1.1
TM-score=0.684 to 1wa5C
SCOP code=a.118.1.1
TM-score=0.840 to 1pw4A
SCOP code=f.38.1.1
TM-score=0.510 to 1vb5B
SCOP code=c.124.1.5
TM-score=0.589 to 1xm9A
SCOP code=a.118.1.24