Template-based Modeling Results for YCIW_ECOLI

Submitted Primary Sequence

>Length 375
MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVILEKETLAPFLSWLDPARVLAVDLFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLCNYYSARLTPLPGPDSTRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTAWDCVIISQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESLRWRSSYEVEKLPEEHTKSSTAELCQLAEILSLHPISLSLLEKLLNSTRGNTQPDNQLAALLCARINGSPACFATCMDSSNEYKKISTLMRKGENEINQWADRHSVERATVQAIQWLTRAPDRFSAAQFSPLLEHEKSSTQIINLLVWSGLCGWINRLKIALGETY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVILEKETLAPFLSWLDPARVLAVDLFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLCNYYSARLTPLPGPDSTRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTAWDCVIISQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESLRWRSSYEVEKLPEEHTKSSTAELCQLAEILSLHPISLSLLEKLLNSTRGNTQPDNQLAALLCARINGSPACFATCMDSSNEYKKISTLMRKGENEINQWADRHSVERATVQAIQWLTRAPDRFSAAQFSPLLEHEKSSTQIINLLVWSGLCGWINRLKIALGETY
CCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVILEKETLAPFLSWLDPARVLAVDLFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLCNYYSARLTPLPGPDSTRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTAWDCVIISQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESLRWRSSYEVEKLPEEHTKSSTAELCQLAEILSLHPISLSLLEKLLNSTRGNTQPDNQLAALLCARINGSPACFATCMDSSNEYKKISTLMRKGENEINQWADRHSVERATVQAIQWLTRAPDRFSAAQFSPLLEHEKSSTQIINLLVWSGLCGWINRLKIALGETY
553232223211011121221323212112301412110002111333200101320210220022002320212323201111100001100201113200210011024121132243122100100200320011122023300220241102130000001000000000000000201012112202113133203012003321312111313313322232222100200300011120010013002122212321110010000201101000000020013133122102201221332232221120002002201311340222002102514121210010000000000001011112334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVILEKETLAPFLSWLDPARVLAVDLFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLCNYYSARLTPLPGPDSTRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTAWDCVIISQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESLRWRSSYEVEKLPEEHTKSSTAELCQLAEILSLHPISLSLLEKLLNSTRGNTQPDNQLAALLCARINGSPACFATCMDSSNEYKKISTLMRKGENEINQWADRHSVERATVQAIQWLTRAPDRFSAAQFSPLLEHEKSSTQIINLLVWSGLCGWINRLKIALGETY
1	PROSPECT2	1gw5b	0.083	0.995	1.422	threading_1	IAAMTVGKDVSSLFPDVVNCMQTDNLSQPDMAIMAVNSFVKDCEDPNPLIRALAVRTEYLCEPLRKCLKDEDPHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINLLTALNECTEWGQIFILDCLSNYNPKDDR--EAQSICERVNSAVVLSAVKVLMKFLELLPKDSDYYNLSGEPEIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCIKVEQSAERCVSTLLDLIQTKVVIRDIFRKYPNKYESIIAPDARAAMIWIVGEYAERIDNADLESFLEGFHDESTQVQLTLLTAIVKLFELVQQVLSIEV
2	PROSPECT2	1ejlI	0.099	0.864	1.419	threading_2	ARKLLSREKQPPIDNIIRAGLIPKGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLL----------ASPHAHISEQAVWALGNIAGDGSAFRDLVIKLALLAVPDLSTLACGYLRNLTWTLSNLCAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV-----------------------------VPQLVKLLGATELPIVTPALRAITGTDEQTQALAVFPSLLTNPKTNIQKEATWTMSNITAG----RQDQIQQVVNHGLVPFLVGVLS--------KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIKDTKIIQVILDAISNIFTEKLSIMIEECG
3	SPARKS	3lvya	0.148	0.451	2.989	threading_3	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKFTIHTIETAPERVKETLRTVK-KDNGGYIPNLIGLLANAPTALETYRTVGEIRNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALRNA--TPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALDVVLGVSLASLCNYANN-ADTPI
4	PROSPECT2	1ee4a	0.087	0.893	1.407	threading_4	FRQILSREHRPPIDVVIQAGVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVAGDSTDYRDYVLQCNAMEPILGLSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMTETLVDACWAISYLSDGPQEAIIPKRLVELTLVQTPALRAVGNIVTGN---------------------------------DLQTQVVINAGVLPALRLLLSSPKENIEACWTISNITAGNTEQIQAVIPPLVKLLEVAKEACWAISNASSGGLQRPDIIRYLVSQGLLEIADNRIIEVTLDALENIL-------KMGEADKEARGLNINENADFIEKAGGMEKIFNCYKIIETYF
5	PROSPECT2	3lvyA	0.141	0.453	1.497	threading_5	---------------------------------------------------------------------SKFTIHTIETAPERVKETLRTVKKD--------------------------------------------------------------------------------------------NGGYIP------------------------------------------NLIGLLANAPTALETYRTVGERRNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALRN--ATPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALDVVLGVSLASLCNYANNADTPIN
6	MUSTER	3lvyA	0.161	0.448	0.998	threading_6	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKFTIHTIETAPERVKETLRTVK-KDNGGYIPNLIGLLANAPTALETYRTVGEIRNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALRNA--TPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALDVVLGVSLASLCNYANNA--QQY
7	PPA-I	3lvyA	0.147	0.453	1.666	threading_7	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKFTIHTIETAPE-RVKETLRTVKKDNGGYIPNLIGLLANAPTALETYRTVGEIRNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALRNA--TPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALDVVLGVSLASLCNYANNADTPIN
8	HHPRED-l	2pfx_A	0.147	0.416	4.205	threading_8	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----------KPKEPTALDLP-ADPLPDETQKYKLG-VPNVLKAYAFNVEKLNAFTA-YNGESQLSKLERE-IAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGE----NYRVA-PLDARQRV-LDFAAK-TRASAEIEEADREVLRSHGFNDRDIWDIANVTGFFN-TNRVASATA---
9	HHPRED-g	2pfx_A	0.123	0.435	3.149	threading_9	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TKPK--EPTALDLP-ADPLPDETQKYFEICQ--EKLG-VPNVLKAYAFNVEKLNAFNDL-LGESQLSKLERE-IAVVVSSINKCFYCLVAHGAAVRQLSGDPQLGE-----NYRVAPLDARQRV-LDFAAK-TRASAEIEEADREVLRSHGFNDRDIWDIANVTGFFN-TNRVASATA--P
10	SP3	3lvya	0.142	0.451	2.936	threading_10	----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SKFTIHTIETAPERVKETLRTVK-KDNGGYIPNLIGLLANAPTALETYRTVGEIRNSLTPTEREVVQITAAVTNGCAFCVAGHTAFSIKQIQAPDLLEALR--NATPIDDDPKLDTLAKFTIAVINTKGRVGDEAFADFLEVGYTPENALDVVLGVSLASLCNYANN-ADTPI

Predicted Tertiary Structure


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TM-score=0.598 to 2prrK SCOP code=a.152.1.3	TM-score=0.534 to 2vglB SCOP code=i.23.1.1	TM-score=0.731 to 1ialA SCOP code=a.118.1.1	TM-score=0.602 to 2prrK SCOP code=a.152.1.3	TM-score=0.695 to 1ialA SCOP code=a.118.1.1