Template-based Modeling Results for YCJS_ECOLI

Submitted Primary Sequence

>Length 351
MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKLGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVNAHSFQKIGTQKSCGQFGEWDPATYSVEDSLFGTIEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREIADDNRHLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKLGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVNAHSFQKIGTQKSCGQFGEWDPATYSVEDSLFGTIEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREIADDNRHLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL
CCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHCCCCEEECCHHHHHCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCEEEEEEEEEECCCCCCEEEEEEECCEEEEEEECCEEEECCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKLGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVNAHSFQKIGTQKSCGQFGEWDPATYSVEDSLFGTIEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREIADDNRHLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL
553222212010000000200120002002313301000001132210220044021110011021003123010000000130002001100311110002201111131022002003522110000011211210210220034121120000001001411121200012322311000000000000000100223212000010012112232123113232221213100000010321000101000001243321010100032000101211011233221121232322332201100210020023432120313200100100100120133212022
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKSAMTSSPLRVAIIGAGQVADKVHASYYCTRNDLELVAVCDSRLSQAQALAEKYGNASVWDDPQAMLLAVKPDVVSVCSPNRFHYEHTLMALEAGCHVMCEKPPAMTPEQAREMCDTARKLGKVLAYDFHHRFALDTQQLREQVTNGVLGEIYVTTARALRRCGVPGWGVFTNKELQGGGPLIDIGIHMLDAAMYVLGFPAVKSVNAHSFQKIGTQKSCGQFGEWDPATYSVEDSLFGTIEFHNGGILWLETSFALNIREQSIMNVSFCGDKAGATLFPAHIYTDNNGELMTLMQREIADDNRHLRSMEAFINHVQGKPVMIADAEQGYIIQQLVAALYQSAETGTRVEL
1	MUSTER	2glxA	0.247	0.923	2.737	threading_1	---------NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRIGRPIAARVFHAVYLPPHLQGWRLERPEAGGGVILDITVHDADTLRFVLND-DPAEAVAISHS-------------AGMGKEGVEDGVMGVLRFQSGVIAQFHDAFTTKFAET---GFEVHGTEGSLIGRNVMTQKPVGTVTLRNAELPLDPANLYETALAAFHSAIEGHGQPSATGEDGVWSLATGLAVVKAAATGQAAEI
2	SPARKS	3q2ia	0.219	0.949	3.584	threading_2	VIPPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA-RGHASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGRIYMVNVNVFWTRPQEDAAGWRGTWEFDGGAFMNQASHYVDLLDWLIG--PVESVQAYTAT--------------LARNIEVEDTGTVSVKWRSGALGSMNVTML-TYPKNLEGSITILGEKGSVRVGGVIQHWEFSEPHAMDEEIKDASGFGHPLYYDNVIKTMRGEATPETDGREGLKSLELLIAMYLSARDGRRVSL
3	PROSPECT2	2glxA	0.247	0.923	4.574	threading_3	N---------RWGLIGASTIARE-WVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRIGRPIAARVFHAVYLPPHLQGWRLERPEAGGGVILDITVHDADTLRFVLND-DPAEAVAISH-------------SAGMGKEGVEDGVMGVLRFQSGVIAQFHDAFTTKFAET---GFEVHGTEGSLIGRNVMTQKPVGTVTLRNAELPLDPANLYETALAAFHSAIEGHGQPSATGEDGVWSLATGLAVVKAAATGQAAEI
4	PPA-I	2glxA	0.247	0.923	3.169	threading_4	---------NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIAEGRIGRPIAARVFHAVYLPPHLQGWRLERPEAGGGVILDITVHDADTLRFVLNDD-PAEAVAISHS-------------AGMGKEGVEDGVMGVLRFQSGVIAQFHDAFTTKFAET---GFEVHGTEGSLIGRNVMTQKPVGTVTLRNAELPLDPANLYETALAAFHSAIEGHGQPSATGEDGVWSLATGLAVVKAAATGQAAEI
5	HHPRED-l	1h6d_A	0.240	0.952	2.468	threading_5	IRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMDQPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGEE-PIEVRAYTYSDPND-----------ERFVEVEDRIIWQMRFRSGALSHGASSYST----TTTSRFSVQGDKAVLLMDPATGYVQTPGHANQSPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVN-
6	HHPRED-g	1h6d_A	0.239	0.954	2.184	threading_6	IRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNSDVMNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGE-EPIEVRAYTYSDPN-----------DERFVEVEDRIIWQMRFRSGALSHGASSYSTT----TTSRFSVQGDKAVLLMDPATGYYQGHANQSMMPQFIMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNT
7	SP3	3q2ia	0.227	0.943	3.744	threading_7	VIPPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGA-RGHASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGRIYMVNVNVFWTRPQDAAGWRGTWEF-DGGAFMNQASHYVDLLDWLIG--PVESVQAYTA--------------TLARNIEVEDTGTVSVKWRSGALGSMNVTMLT-YPKNLEGSITILGEKGSVRVGGVQHWEFSEPHAMDEEIKDA-SGFGHPLYYDNVIKTMRGEATPETDGREGLKSLELLIAMYLSARDGRRVSL
8	SAM-T99	1h6dA	0.240	0.949	2.823	threading_8	IRPMPEDRRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVPRDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIGYRCHYDPMNRAAVKLIRENQLGKLGMVTTDNVMDQNDPAQQWRLRRELAGGGSLMDIGIYGLNGTRYLLGE-EPIEVRAYTYSDPND-----------ERFVEVEDRIIWQMRFRSGALSHGASSYSTT----TTSRFSVQGDKAVLLMDPATGYYQNLISVQTPGHANMPANNQFSAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPV--
9	MUSTER	3q2iA	0.229	0.946	2.728	threading_9	VIPPITDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGAR-GHASLTDMLAQTDADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVVKQNRRNATLQLLKRAMQEKRFGRIYMVNVNVFWTRPQEYAGWRGTWE-FDGGAFMNQASHYVDLLDWLIG--PVESVQAYTAT--------------LARNIEVEDTGTVSVKWRSGALGSMNVTM-LTYPKNLEGSITILGEKGSVRVGGVAVNEIQHWEFSEPHAMDEESGFGHPLYYDNVIKTMRGEATPETDGREGLKSLELLIAMYLSARDGRRVSL
10	SPARKS	3moia	0.189	0.934	3.285	threading_10	-------MKIRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGI-PVFATLAEMMQHVQMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGTSRSHDPVVRTLRAIVQEGSVGRVSMLNCFNYTDFLYRPRRPEELDTSKGGGIIYNQLPHQIDSIKTITGQ-RITAVRAMT--------------GRLDPKRPTEGNCAAMLTLEDGACAVMVYSGYDHFDSDEMHVMLVTCEHADLRASPEGVLVYGDEGVREVPAITGRGPFSQGDTIDELRDAIAGVAPALRDARWGKDTLEVCLAVLESSATGRQVER

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.861 to 1zh8A SCOP code=c.2.1.3	TM-score=0.857 to 1zh8A SCOP code=c.2.1.3	TM-score=0.860 to 1zh8A SCOP code=c.2.1.3	TM-score=0.862 to 1zh8A SCOP code=c.2.1.3	TM-score=0.860 to 1zh8A SCOP code=c.2.1.3