Template-based Modeling Results for YDAL_ECOLI

Submitted Primary Sequence

>Length 187
MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTAQAKQENWERHAKRSR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTAQAKQENWERHAKRSR
CCHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCHHEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTAQAKQENWERHAKRSR
4433112101201331120342232333324334233323222233212221232122232132333212310112031131113000000311032014001200220132212000000031323523221012101310331330100010233311100000002322321232133324325
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRKTAQAKQENWERHAKRSR
1	MUSTER	3qd7X	1.000	0.701	3.070	threading_1	---------------------------------------DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK-----------------
2	SPARKS	3qd7x	1.000	0.701	3.973	threading_2	---------------------------------------DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK-----------------
3	PROSPECT2	3qd7X	0.954	0.701	2.567	threading_3	DTLQLD---------------------------------------NFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALR-----------------K
4	PPA-I	3qd7X	1.000	0.701	4.295	threading_4	---------------------------------------DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK-----------------
5	HHPRED-l	3qd7_X	1.000	0.701	6.806	threading_5	---------------------------------------DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK-----------------
6	HHPRED-g	3qd7_X	1.000	0.701	6.876	threading_6	---------------------------------------DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK-----------------
7	SP3	3qd7x	1.000	0.701	4.073	threading_7	---------------------------------------DTLQLDNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK-----------------
8	SAM-T99	3qd7X	1.000	0.668	5.902	threading_8	---------------------------------------------NFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMVFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGGSGACYVALRK-----------------
9	MUSTER	2zqeA	0.300	0.428	1.689	threading_9	------------------------------------------------------------------------------------VKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGT------GALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALRP-----------------
10	SPARKS	2zqea	0.300	0.428	2.548	threading_10	------------------------------------------------------------------------------------VKEVDLRGLTVAEALLEVDQALEEARALGLSTLRLLHGKGT------GALRQAIREALRRDKRVESFADAPPGEGGHGVTVVALRP-----------------

Predicted Tertiary Structure


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TM-score=0.520 to 1dcjA TM-score=0.999 to native SCOP code=d.68.3.3	TM-score=0.520 to 1dcjA TM-score=0.999 to native SCOP code=d.68.3.3	TM-score=0.520 to 1dcjA TM-score=0.999 to native SCOP code=d.68.3.3	TM-score=0.521 to 1dcjA TM-score=0.997 to native SCOP code=d.68.3.3	TM-score=0.520 to 1dcjA TM-score=0.999 to native SCOP code=d.68.3.3

Experimental Structure

Download 3qd7X

SCOP code=d.68.3.3