Template-based Modeling Results for YDEM_ECOLI

Submitted Primary Sequence

>Length 385
MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
1110012012301020210022333232233420231102200320131212100000111111111130022002102311233200000001001023300200341211000001113300121231321211012001002202223120000000012113202100200321202100000002112232312212310120120111121002001100121033212311121011001201122221010031021000010201001011111231311102323131011110111333232303202002102110010001313332122103002100200020021012103341212201200332345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIKQYIAASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNALQTNGILLNNEWCAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVINNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRIPAKCQQCAYKPICNGGCPKHRITKVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN
1	MUSTER	1tv8A	0.193	0.766	1.153	threading_1	IRDLRLSVTDRCNFRCDYCMPKEVFVFLPKNELLTFDEMARIAKVYAELGVK--KIRITGGEPLMR-----RDLDVLIAKLNQIDGIDIGLTTNGLLL-KKHGQKLYDAGLRINVSLDAIDTLFQSIN---NRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSK----------VVTKDEMLTMIEQHFEI-VEPKYFGEVAKYY-----RHKDNGVQSQSFCSTCT-RARLSSDGKFYGCLFATVDGFNVSGVTDEELKEQFKALWQIRDDR---------YSD------ERTAQTVANRQ----------------------------------------------
2	SPARKS	1tv7a	0.158	0.805	2.543	threading_2	IRDLRLSVTDRCNFRCDYCMPKEDFVFLPKNELLTFDEMARIAKVYAELGVKK--IRITGGEPLMRRD--LDVLIAKLNQIDGIED--IGLTTNGLLL-KKHGQKLYDAGLRINVSLDAID--DTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHI-EIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFE--------IDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAIRSGVTDEELKEQFKALWQIRDDR--------------YSDERTAQTVANRQ-------------------------------------------
3	PROSPECT2	1tv7A	0.154	0.792	2.530	threading_3	IRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLLLTFDEMARIAKVYAELGVKK--IRITGGEPLMRRD--LDVLIAKLNQ--IDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDD--TLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKV-----------VTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYR----HKDNGVQFGLITSVSQTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDE---------------------------------------------------------ELKEQFKALWQIRDDRYSDERTAQTVANQ
4	PPA-I	1tv8A	0.171	0.790	1.285	threading_4	IRDLRLSVTDRCNFRCDYCMFGDDFVFLPKNELLTFDEMARIAKVYAELGVK--KIRITGGEPLMR-----RDLDVLIAKLNQIDGIDIGLTTNGLLL-KKHGQKLYDAGLRINVSLDAIDTLFQSINNRNIK---ATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHI-EIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHF-------EIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCT-RARLSSDGKFYGCLFATVDGFNVSGVTDEELKEQFKALWQIRDDR---------YSDERTAQTVANRQ----------------------------------------------------
5	HHPRED-l	1tv8_A	0.158	0.756	5.304	threading_5	RDLRLS-VTDRCNFRCDYCMPKEVFGFLPKNELLTFDEMARIAKVYAELGVKK--IRITGGEPLMRRD--L---DVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDGLRRINVSLDAIDDLFQSIN---NRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGWDFSKVVT----------KDEMLTMIEQHFEIDPVEPKYGEVAKYYRKDNGVQFGITSVSQSFCSTC-TRARLSSDGKFYGCLFATVDGFNVKAFISGELKEQFKALWQIRDDRYNRQ-----------------------------------------------------------------------
6	HHPRED-g	1tv8_A	0.169	0.769	4.637	threading_6	IRDLRLSVTDRCNFRCDYCMPKEVFVFLPKNELLTFDEMARIAKVYAELGVKKIR--ITGGEPLMRRD-----LDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRINVSLDAIDTLFQSIN---NRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNG----------WDFSKVVTKDEMLTMIEQHFEIDPEKYFGEVAKYYRHKDNGVQFGITSVSQSFCSTCT-RARLSSDGKFYGCLFATVDGFNVKAFIDEELKEQFK-------ALWQ--IRDDRYQTVANRQ----------------------------------------------------------
7	SP3	1tv7a	0.165	0.803	2.653	threading_7	IRDLRLSVTDRCNFRCDYCMPKEDFVFLPKNELLTFDEMARIAKVYAELGVK--KIRITGGEPLMR-----RDLDVLIAKLNQIDGIDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDADDTLFQSIN---NRNIKATTILEQIDYATSIGLNVKVNVVIQKINDDQIIPMLEYFKDKHI-EIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIE--QHF-----EIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCT-RARLSSDGKFYGCLFATVDGFNVAFIRSGVTDEELKEQFKALW-----QIRD-DRYSD-----ERTAQTVANRQ----------------------------------------------
8	SAM-T99	1tv8A	0.178	0.745	2.776	threading_8	IRDLRLSVTDRCNFRCDYCMPKEDFVFLPKNELLTFDEMARIAKVYAELGVKKIRIT--GGEPLMR-RDL-DVLIAKLNQI--DGIEDIGLTTNGLLLKK-HGQKLYDAGLRINVSLDAIDDTLFQSINNRNIKA--TTILEQIDYATSIGLNVKVNVVIQKGINDQIIPMLEYFKDKHIE-IRFIEFMDVGNDNGW------------DFSKVV--TKDEMLTMIEQHFE--IDPVEPKYFGEVAKYYRHKDNGVQSFCSTC-TRARLSSDGKFYGCLFATVGFNVKAFIRSGVTDEELKEQFKALWQIRDDR-----------------------------------------------------------------------
9	MUSTER	2yx0A	0.140	0.629	0.677	threading_9	RCLQMTPVLAWCTHNCIFCWRPMENFLGTPQPWDDVEESIKAQRKLLIGYKPKVHAAISLGEPMLYPY--MGDLVEEFHKR----GFTTFIVTNGTIP-ERLEEMIKEDKLQLYVSITAPIETYNSVNIPM-IPDGWERILRFLELMRDLPTRTVVRLTLVKENMHSPEKYAKLILKARPMFVEAKAYMNRLTINN---------------MPSHQDIREFAEALVKH-----LPGYHI----------------EDEYEPSR--VVLIMRD-DVDPQGTGVE-----GRFIKH-------------------------------------------------------------------------------------------
10	SPARKS	1olta	0.102	0.945	1.544	threading_10	VHI------PFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLGRHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQNADAEISIEVDPREIELDVLDHLRAEGFN-RLSM-GVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTTNIDLIYGKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADL------PSPQQKLDILQETIAFLTQSGYQFIGMDHFDDELAVAQREGVLHRNFQGYTTQ-----GDTDLLGMG--VSAISMIGDCYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYSPIEQQWLLFADYFAEDLKLLAPLAKDGQVTAKGRLLIRNICMC

Predicted Tertiary Structure


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TM-score=0.784 to 1tv8A SCOP code=c.1.28.3	TM-score=0.857 to 1tv8A SCOP code=c.1.28.3	TM-score=0.867 to 1tv8A SCOP code=c.1.28.3	TM-score=0.827 to 1tv8A SCOP code=c.1.28.3	TM-score=0.847 to 1tv8A SCOP code=c.1.28.3